View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_45 (Length: 296)
Name: NF17668_low_45
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 31869622 - 31869340
Alignment:
| Q |
1 |
tatttctcaacaaggttaaggatactatttaacatgctgtttttgtgttttccttttgccaaagaaagattagatgaaatagcaaaaataaactcagagg |
100 |
Q |
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| T |
31869622 |
tatttctcaacaaggttaaggatactatttaacatgctgtttttgtgttttctttttgccaaagaaagattagatgaaatagcaaaaataaactcagagg |
31869523 |
T |
|
| Q |
101 |
gagaaacttcttctcaaatgggaaggaagcatctttatggtccaacttctgggacaaccttaaacacagtaaccccttgtgctgcatgtaagctattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869522 |
gagaaacttcttctcaaatgggaaggaagcatctttatggtccaacttctgggacaaccttaaacacagtaaccccttgtgctgcatgtaagctattgag |
31869423 |
T |
|
| Q |
201 |
aagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagctgttcataaagtct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869422 |
aagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagctgttcataaagtct |
31869340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 36232799 - 36232691
Alignment:
| Q |
175 |
ccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagctgttc |
274 |
Q |
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|||||||||||||| ||||| |||||| |||| ||||| | ||||||||||| ||||| ||||| || || ||||||||||| || ||||| |||| | |
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| T |
36232799 |
ccttgtgctgcatgcaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctcagaagtttgcttctgtcc |
36232700 |
T |
|
| Q |
275 |
ataaagtct |
283 |
Q |
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| ||||||| |
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| T |
36232699 |
acaaagtct |
36232691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 43201001 - 43200890
Alignment:
| Q |
170 |
taaccccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagc |
269 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||||||| | || || || || ||||| ||||| || || ||||| || ||||| ||||| | |
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| T |
43201001 |
taaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttctctcctcatgaaccccaaaagtttgcttc |
43200902 |
T |
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| Q |
270 |
tgttcataaagt |
281 |
Q |
| |
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|||||| ||||| |
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| T |
43200901 |
tgttcacaaagt |
43200890 |
T |
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