View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_46 (Length: 293)
Name: NF17668_low_46
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 43559051 - 43559300
Alignment:
| Q |
1 |
gaatttgtaagtatatgatgaaatgtatgggtttttgtctttttgatcatatttgagtctttgaccaaagagaaaaagggtgataaatataaaatatgta |
100 |
Q |
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| T |
43559051 |
gaatttgtaagtatatgatgcaatgtatgggtttttgtctttttgatcatatttgagtctttgaccaaagagaaaaagggtgataaatataaaatatgta |
43559150 |
T |
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| Q |
101 |
atactaat-----aattcagtagttgtagtgttggacaatataaaatattacagccacaaaacaaaattagcttcaatcattaatcttaaagaatatacc |
195 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43559151 |
atactaatataataattcagtagttgtagtgttggacaatataaaatattacagccacaaaacaaaattagctacaatcattaatcttaaagaatatacc |
43559250 |
T |
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| Q |
196 |
gttattcaaactttggcttatgaaaacagatacatcaatcaatggtaagg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559251 |
gttattcaaactttggcttatgaaaacagatacatcaatcaatggtaagg |
43559300 |
T |
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