View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_47 (Length: 292)
Name: NF17668_low_47
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 229173 - 229443
Alignment:
| Q |
1 |
agaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaataataataatatatagaggtaaaaataacaatctgagttctgaagagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229173 |
agaatgcaaacaatgtatgtagtaataaactcccatatcacatcgagaaaata---ataatatatagaggtaaaaataacaatctgagttctgaagagaa |
229269 |
T |
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| Q |
101 |
gacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgccccactctgcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229270 |
gacagaggtatcgatctagaacagcaaggacaggaaagcacatccaaatactaatccaaccatcttatgtgaccacaacttctctgccccactctgcaat |
229369 |
T |
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| Q |
201 |
gcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229370 |
gcaatatacccacaaaattaattaggctaacaatttactatgtttgcatcaaaacgatgtgcacacacaaaatt |
229443 |
T |
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