View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_48 (Length: 288)
Name: NF17668_low_48
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 40531050 - 40531187
Alignment:
| Q |
136 |
gaaggagaaatcaaagatgattccttcactcacacatttctacaaaattaaataataaaatggaatggaagggaatttaatgaagtggaatggaacaatt |
235 |
Q |
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| T |
40531050 |
gaaggagaaatcaaagatgattccttcactcacacatttctacaaaattaaataataaaatggaatggaagggaatttaatgaagtggaatggaacaatt |
40531149 |
T |
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| Q |
236 |
ctttttctccattccaattttctaatcaacaagttcat |
273 |
Q |
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| T |
40531150 |
ctttttctccattccaattttctaatcaacaagttcat |
40531187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40530915 - 40530973
Alignment:
| Q |
1 |
ggaaaaactaacaacaatcagcctaccattttcagcaaagtaaaggtgatacgcaactc |
59 |
Q |
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| T |
40530915 |
ggaaaaactaacaacaatcagcctaccattttcagcaaagtaaaggtgatacgcaactc |
40530973 |
T |
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