View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_low_5 (Length: 711)
Name: NF17668_low_5
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 176 - 697
Target Start/End: Complemental strand, 39273243 - 39272722
Alignment:
| Q |
176 |
ttgtcgcgtgcggcaaagaagcttacatcatcacccattcaagaactctctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39273243 |
ttgtcgcgtgcggcaaagaagcttacatcatcacccattcaagaactctctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctg |
39273144 |
T |
|
| Q |
276 |
acttccctgctcctctccacatcaaaaacgccgccgtttccgccatcaattccgacctcaaccaatacaggtttttctttttcttcacacacaactcaaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39273143 |
acttccctgctcctctccacatcaaaaacgccgccgtttccgccattaattccgacctcaaccaatacaggtttttctttttctttacacacaactcaaa |
39273044 |
T |
|
| Q |
376 |
ctaataatacatttttcaccaattcatagaatctatctactctttgtatttcaaggcatgtgcaaggtatatgtgaacacttggctaagatagtaaagga |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39273043 |
ctaataatacatttttcaccaattcatagaatctatctactctttgtatttcaaggcatgtgcaaggtatatgtgaacacttggctaagatagtaaagga |
39272944 |
T |
|
| Q |
476 |
aatgcatggtttagatattgattctgagacggatgtagctatctgttgtggtcaaactgaggcttttgctgctgcaatctttgcaagtatgctctttatt |
575 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272943 |
aatgcatggtttagatattgactctgagacggatgtagctatctgttgtggtcaaactgaggcttttgctgctgcaatctttgcaagtatgctctttata |
39272844 |
T |
|
| Q |
576 |
gttttattgttttagttcaagctgacacatacaccgtacacaatatcgacactgatacattgccgtttatcatttaagataatacaagtaattgaatgta |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39272843 |
gttttattgttttagttcaagctgacacatacaccttacacaataccgacactgatacattgccgtttatcatttaagttaatacaagtaattgaatgta |
39272744 |
T |
|
| Q |
676 |
agaacatgtgttggtgttagtg |
697 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
39272743 |
agaacatgtgttggcgttagtg |
39272722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 39273382 - 39273272
Alignment:
| Q |
34 |
cataattttatgacaacatattgaattttaaaatttaactaaaaaaccagcaagcttaaaaccaattcaacacacagtat-----agtagttgtgtaaca |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39273382 |
cataattttatgacaacatatttaattttaaaatttaactaaaaaaccagcaaccttaaaacaaattcaacacacagtatagtatagtagttgtgtaaca |
39273283 |
T |
|
| Q |
129 |
gggatagtgat |
139 |
Q |
| |
|
||||||||||| |
|
|
| T |
39273282 |
gggatagtgat |
39273272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University