View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_51 (Length: 281)
Name: NF17668_low_51
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 39711945 - 39712210
Alignment:
| Q |
1 |
cacacaactcaaatttcattttcattattctttcttccctctctcatcctcttaattaagctcaaatttagataaatttt-attcttttcttatttggtt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39711945 |
cacacaactcaaatttcattttcattattctttcttccctctctcatcctcttaattaagctcaaatttagataaatttttattcttttcttatttggtt |
39712044 |
T |
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| Q |
100 |
cacaaattttttccattaagtttcccaagacgcttgattttaggattttcattggatcaaacaaagtcattaatcaatggttttgaaggnnnnnnnnnnn |
199 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39712045 |
cacaaattttttccattaagtttcctaaggtgcttgattttaggattttcattggatcaaacaaagtcattaatcaatggttttgaaggttttttccttt |
39712144 |
T |
|
| Q |
200 |
nngattctacttgtgatatgctcttttgctgtggaagccattaatcacaatcacaatagtctcaag |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39712145 |
ttgattctacttgtgatatgctcttttgctgtggaagccattaatcacaatcacaatagtctcaag |
39712210 |
T |
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