View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_52 (Length: 277)
Name: NF17668_low_52
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 9037365 - 9037515
Alignment:
| Q |
105 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
204 |
Q |
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| T |
9037365 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcaccaggcatt |
9037464 |
T |
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| Q |
205 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacc |
255 |
Q |
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| T |
9037465 |
ggtagaacaccatcacagtgataattatctcgcttcaaatgaagaaatacc |
9037515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 9042855 - 9043005
Alignment:
| Q |
105 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
204 |
Q |
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| T |
9042855 |
taatggttcaaataagatcatttgtatccaaattacactctttcccaccggaatttaaagctgccccggtttattttaatgtttcatctcatgaggcatt |
9042954 |
T |
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| Q |
205 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacc |
255 |
Q |
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| T |
9042955 |
gagagaacaccaccatagtgataattatatagcttcaaatgaagaaatacc |
9043005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9037257 - 9037295
Alignment:
| Q |
1 |
atattattcatattcaacatattagttttacagataaca |
39 |
Q |
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| T |
9037257 |
atattattcatattcaacatattagttttacagataaca |
9037295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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