View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_54 (Length: 249)
Name: NF17668_low_54
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10754581 - 10754799
Alignment:
| Q |
18 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaacaaagttcatatgaagttctaaacaacgtttgtgttaatat |
117 |
Q |
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| T |
10754581 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaacaaagttcatatgaagttccaaataacgtttgtgttaatat |
10754680 |
T |
|
| Q |
118 |
tattnnnnnnnntacacaactgatgtgtatattaactcactatgttttttaatgttcttaaactgtgttggtttataagaataatagaaactacccattg |
217 |
Q |
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| T |
10754681 |
tatt-aaaaaaatacacaattgatgtatatattaa-ttactatgttttttaatgttcttaaactgtgttggtttataagaaagatagaaactactcattg |
10754778 |
T |
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| Q |
218 |
ttataaattaacttctttcat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
10754779 |
ttataaattaacttctttcat |
10754799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10751743 - 10751522
Alignment:
| Q |
18 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaacaaagttcatatgaagttctaaacaacgtttgtgttaatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||| |
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| T |
10751743 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaactaaaatgaacaaatttcatatatagttccgaacaacttttgtgttaatat |
10751644 |
T |
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| Q |
118 |
tatt-nnnnnnnntacacaactgatgtgtatattaactcactatgttttttaatgttcttaaactgtgttggtttataagaataatagaaactacccatt |
216 |
Q |
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| T |
10751643 |
tattaaaaaaaaatacatagttgatgtatatactcactcactatgttttttaatgttcttaaattgtgttggtttataagaaagatagaagctatccatt |
10751544 |
T |
|
| Q |
217 |
gttataaattaacttctttcat |
238 |
Q |
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|||||||| ||| ||||||||| |
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| T |
10751543 |
gttataaactaatttctttcat |
10751522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 10752083 - 10752159
Alignment:
| Q |
18 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaacaaagttcatatgaagtt |
94 |
Q |
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| T |
10752083 |
attcatatatttttgcaataacatatgatccaacttttgaaataatgaattaaaatgaacaaagttcatatgaagtt |
10752159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 8835728 - 8835945
Alignment:
| Q |
18 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaacaaagttcatatgaagttctaaacaacgtttgtgttaatat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||| |
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| T |
8835728 |
attcatatatttttgcaataacatatgatccaacttttgagataatgaattaaaatgaccaaatttcatatgaagtttcgaacaacttttgtgttaatat |
8835827 |
T |
|
| Q |
118 |
tattnnnnnnnntacacaactgatgtgtatattaactcactatgttttttaatgttcttaaactgtgttggtttataagaataatagaaactacccattg |
217 |
Q |
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|||| |||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||| |
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| T |
8835828 |
tattaaaaaaaatacacaactgatgtatatactcactcactatgttttttaatgttcttaaatcgtgttggtttataagaaagataaaaactatccattg |
8835927 |
T |
|
| Q |
218 |
ttataaattaacttcttt |
235 |
Q |
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||||||| ||| |||||| |
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|
| T |
8835928 |
ttataaactaatttcttt |
8835945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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