View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_low_55 (Length: 248)
Name: NF17668_low_55
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 38195194 - 38195326
Alignment:
| Q |
18 |
ctttcccttctcaactctcaccaccttttgtttgttgtctacaagttttgaactcagccaaagagaaagtcattcatcaaacaactatcatgaaggtacg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38195194 |
ctttcccttctcaactctcaccaccttttgtttgttgtttacaagttttgaactcagccaaagagaaagtcattcatcaaacaactatcatgaaggtacg |
38195293 |
T |
|
| Q |
118 |
cttatttcattcaagatgctgctatatatatat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38195294 |
cttatttcattcaagatgctgctatatatatat |
38195326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 38195358 - 38195412
Alignment:
| Q |
150 |
tgtgtgtcacactccattattaatttgtcaccattttgcttcaaacttcaaagtg |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38195358 |
tgtgtgtcacactccattatgaatttgtcaccattttgcttcaaacttcaaagtg |
38195412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University