View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_56 (Length: 234)
Name: NF17668_low_56
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 47560329 - 47560526
Alignment:
| Q |
19 |
aaccatccctatctaattttgttccttcccttcttctccttccttattaccttcatcatcttcaagcgttgttcatataaaacccatgaaatttcttcat |
118 |
Q |
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| T |
47560329 |
aaccatccctatctaattttgttccttctcttcttctccttccctgttaacttcatcatcttcaagcgttgttcatataaaacccatgaaatttcttcat |
47560428 |
T |
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| Q |
119 |
cacaattagcaacaacaacatcaaccttttcataacagatccttttaaatcttctagatctcgccttcgtcttcccaaggcatccaaattaggcaacagg |
218 |
Q |
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| T |
47560429 |
cacaattag---caacaacatcaaccttttcataacagatccttttaaatcttctagatctcgccttcgtcttcccaaggcatccaaattaggcaacagg |
47560525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 38407314 - 38407233
Alignment:
| Q |
69 |
cttcatcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
38407314 |
cttcatcatcttcaa-cattgttcatataaaacccataaaatttcttcatcacaattagcaac---aacatcaaccttttcataac |
38407233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 4168712 - 4168635
Alignment:
| Q |
73 |
atcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
4168712 |
atcatcttcaa-cattgttcatataaaacccagaaaatttcttcatcacaattagcaac---aacatcaaccttttcataac |
4168635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 41521570 - 41521647
Alignment:
| Q |
73 |
atcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
41521570 |
atcatcttcaa-cattgttcatataaaacccagaaaatttcttcatcacaattag---caacaacatcaaccttttcataac |
41521647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 7487249 - 7487168
Alignment:
| Q |
69 |
cttcatcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
7487249 |
cttcatcaccttcaa-cattgttcatataaaacccaaaaaatttcttcatcacaattag---aaacaacatcaaccttttcataac |
7487168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 118869 - 118809
Alignment:
| Q |
91 |
tcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
118869 |
tcatataaaatccagaaaatttcttcatcacaattagcaac---aacatcaaccttttcataac |
118809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 7982566 - 7982643
Alignment:
| Q |
73 |
atcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
7982566 |
atcatcttcaa-cattgttcatataaaacccaaaaaaattcttcatcacaattag---caacaacatcaaccttttcataac |
7982643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 7427823 - 7427746
Alignment:
| Q |
73 |
atcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacaacatcaaccttttcataac |
154 |
Q |
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| T |
7427823 |
atcatcttcaa-cattgtacatataaaactcaaaaaatttcttcatcacaattagcaac---aacatcaaccttttcataac |
7427746 |
T |
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