View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_59 (Length: 233)

Name: NF17668_low_59
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_59
NF17668_low_59
[»] chr7 (2 HSPs)
chr7 (154-211)||(6003523-6003580)
chr7 (154-206)||(2570470-2570522)
[»] chr5 (7 HSPs)
chr5 (154-206)||(39369015-39369067)
chr5 (154-205)||(3204437-3204488)
chr5 (154-212)||(25362421-25362479)
chr5 (154-189)||(1223089-1223124)
chr5 (154-193)||(17218882-17218921)
chr5 (154-189)||(35847269-35847304)
chr5 (154-193)||(42742213-42742252)
[»] chr3 (4 HSPs)
chr3 (154-213)||(45181741-45181800)
chr3 (154-213)||(16285213-16285272)
chr3 (156-194)||(17324034-17324072)
chr3 (154-194)||(23087677-23087717)
[»] chr2 (2 HSPs)
chr2 (158-213)||(37128802-37128857)
chr2 (154-194)||(41958398-41958438)
[»] chr4 (2 HSPs)
chr4 (154-192)||(26500150-26500188)
chr4 (154-194)||(6760858-6760898)
[»] chr1 (3 HSPs)
chr1 (158-194)||(38710118-38710154)
chr1 (158-213)||(4397349-4397404)
chr1 (154-192)||(4391776-4391814)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 6003580 - 6003523
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003580 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgata 6003523  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 2570522 - 2570470
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacc 206  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  2570522 taacaacaacacctcaaagaaccaacaccgccaacagtgatcaaaaaggcacc 2570470  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 39369067 - 39369015
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacc 206  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  39369067 taacaacagctcctccaagaaccaacatcgccaacagtgataaataaggcacc 39369015  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 3204488 - 3204437
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcac 205  Q
    |||||||| ||||||||||||||||||||| ||| |||||| ||||||||||    
T  3204488 taacaacaactcctcaaagaaccaacaccgtcaatagtgatcaaaaaggcac 3204437  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 25362479 - 25362421
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatag 212  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||  ||||||| |||||    
T  25362479 taacaacaactcctcaaagaactaacaccgccaacagtgatcaattaggcacccgatag 25362421  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 1223124 - 1223089
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaaca 189  Q
    |||||| |||||||||||||||||||||||||||||    
T  1223124 taacaatagctcctcaaagaaccaacaccgccaaca 1223089  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 17218921 - 17218882
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtga 193  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  17218921 taacaacaactcatcaaagaaccaacaccgccaacagtga 17218882  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 35847304 - 35847269
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaaca 189  Q
    |||||||| |||||||||||||||||||||||||||    
T  35847304 taacaacaactcctcaaagaaccaacaccgccaaca 35847269  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 42742213 - 42742252
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtga 193  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  42742213 taacaacagctcctcaaagaaccaacaccgtgaacagtga 42742252  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 45181800 - 45181741
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagt 213  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||  |||||| |||||||    
T  45181800 taacaacagctcctcaaagaaccaacaccgccaacggtgatcaattaggcacttgatagt 45181741  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 16285272 - 16285213
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagt 213  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||  ||||||| ||||||    
T  16285272 taacaacagttccttaaagaaccaacaccgccaacagtgattaattaggcacccgatagt 16285213  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 17324034 - 17324072
Alignment:
Q  156 acaacagctcctcaaagaaccaacaccgccaacagtgat 194  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  17324034 acaacaactcctcaaagaaccaacaccgccaacagtgat 17324072  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 23087717 - 23087677
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgat 194  Q
    |||||||||||| ||||||||||| ||||||||||| ||||    
T  23087717 taacaacagctcatcaaagaaccatcaccgccaacaatgat 23087677  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 37128802 - 37128857
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagt 213  Q
    |||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||    
T  37128802 aacagctcctcaaagaaccaacaccgccaacaatgatgaattaggcacccgatagt 37128857  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 41958438 - 41958398
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgat 194  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  41958438 taacaacaacttctcaaagaaccaacatcgccaacagtgat 41958398  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 26500150 - 26500188
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtg 192  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  26500150 taacaacagctcctcaaagaaccaacaccaccaacagtg 26500188  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 6760898 - 6760858
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtgat 194  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  6760898 taacaatagctcatcaaagaaccaacaccgccaacagtgat 6760858  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 38710154 - 38710118
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacagtgat 194  Q
    ||||| |||||||||||||||||||||||||||||||    
T  38710154 aacagttcctcaaagaaccaacaccgccaacagtgat 38710118  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 4397349 - 4397404
Alignment:
Q  158 aacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagt 213  Q
    |||| ||||||||||||||||||||||||||| |||| ||  ||||||| ||||||    
T  4397349 aacaactcctcaaagaaccaacaccgccaacaatgatcaattaggcacccgatagt 4397404  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 4391814 - 4391776
Alignment:
Q  154 taacaacagctcctcaaagaaccaacaccgccaacagtg 192  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  4391814 taacaaaagctcctcaaagaaccaacaccaccaacagtg 4391776  T

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