View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_60 (Length: 233)
Name: NF17668_low_60
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_60 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 35183212 - 35183420
Alignment:
| Q |
25 |
tcatatttatatatcttaacaaaattaaatgaaatgttgcaggccttagttggttgagtgaataaaaatacaatattaacctggattttcaagccatctt |
124 |
Q |
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| T |
35183212 |
tcatatttatatatcttaacaaaattaaatgaaatgttgcaggccttagttggttgagtgaataaaaatacaatattaacctggattttcaagccatctt |
35183311 |
T |
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| Q |
125 |
ctgcaagccagaagtaatcagggattcgggctaaatgaagtttgtatgcctctgagtttgggtcttcaacccaacgcgctatcaaacataatactttctc |
224 |
Q |
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| T |
35183312 |
ctgcaagccagaagtaatcagggattcgggctaaatgaagtttgtatgcctctgagtttgggtcttcaacccaacgcgctatcaaacataatactttctc |
35183411 |
T |
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| Q |
225 |
tacacttcc |
233 |
Q |
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| T |
35183412 |
tacacttcc |
35183420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 12328366 - 12328455
Alignment:
| Q |
111 |
tttcaagccatcttctgcaagccagaagtaatcagggattcgggctaaatgaagtttgtatgcctctgagtttgggtcttcaacccaacg |
200 |
Q |
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| T |
12328366 |
tttcaagccatcttctgcgacccaaaggtaatcagggatacgggctaaatgaagtttgtatgcctttgagtttggatcatcaacccaacg |
12328455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 12294992 - 12295094
Alignment:
| Q |
101 |
taacctggattttcaagccatcttctgcaagccagaagtaatcagggattcgggctaaatgaagtttgtatgcctctgagtttgggtcttcaacccaacg |
200 |
Q |
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| T |
12294992 |
taacctggatttttaagccatcttcagcgacccagaagaaatcagggatacgggctaaatgatgtttatatgcctctgagtcttggtcatcaacccaatg |
12295091 |
T |
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| Q |
201 |
cgc |
203 |
Q |
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||| |
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| T |
12295092 |
cgc |
12295094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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