View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_65 (Length: 215)
Name: NF17668_low_65
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 1586929 - 1587112
Alignment:
| Q |
16 |
aaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatattt |
115 |
Q |
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| T |
1586929 |
aaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatattt |
1587028 |
T |
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| Q |
116 |
cccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccactcccacaacacttctcattcttcatttc |
199 |
Q |
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| T |
1587029 |
cccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccactcccacaactcctgtcattcttcatttc |
1587112 |
T |
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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 24238913 - 24239069
Alignment:
| Q |
16 |
aaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatattt |
115 |
Q |
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| T |
24238913 |
aaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattt |
24239012 |
T |
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| Q |
116 |
cccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccact |
172 |
Q |
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| T |
24239013 |
tccatcaacccaatcaccttcatatcttccactcacataataatgataaactccact |
24239069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 41090311 - 41090403
Alignment:
| Q |
93 |
tcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccactcccacaacacttc |
185 |
Q |
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| T |
41090311 |
tcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctgaacacttc |
41090403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 17303759 - 17303829
Alignment:
| Q |
115 |
tcccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccactcccacaacacttc |
185 |
Q |
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||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |||||||| |||||||| |
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| T |
17303759 |
tcccatcaatccaatccccttcatacctcccactcatactataataataaacaccactccctgaacacttc |
17303829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 32693652 - 32693777
Alignment:
| Q |
21 |
ctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccat |
120 |
Q |
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|||||||||||| | |||| ||||| ||| | ||||||| ||||||||| ||||| || || ||||||||||| ||| | || |||||| | |||| |
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| T |
32693652 |
ctataaacaccataaccatgtctcattccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccat |
32693751 |
T |
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| Q |
121 |
caacccaatccccttcatatcttcca |
146 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
32693752 |
caacccaatcaccttcatatcttcca |
32693777 |
T |
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