View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_67 (Length: 206)
Name: NF17668_low_67
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_67 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 36428088 - 36427906
Alignment:
| Q |
24 |
tattgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagcc |
123 |
Q |
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| T |
36428088 |
tattgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaacgtctgaactgttgcaacatcagtcttgaaagcc |
36427989 |
T |
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| Q |
124 |
aaagccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
206 |
Q |
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| T |
36427988 |
aaagccaagacattgtcatcaatggtagaattaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
36427906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 36425117 - 36424933
Alignment:
| Q |
22 |
agtattgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaag |
121 |
Q |
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| T |
36425117 |
agtattgatagaaagttcacatgttcaagccattatcgtaatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaag |
36425018 |
T |
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| Q |
122 |
ccaaagccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
206 |
Q |
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| T |
36425017 |
ccagagccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
36424933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 36421589 - 36421409
Alignment:
| Q |
26 |
ttgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaa |
125 |
Q |
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| T |
36421589 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccag |
36421490 |
T |
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| Q |
126 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
206 |
Q |
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| T |
36421489 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaaggc |
36421409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 19144266 - 19144402
Alignment:
| Q |
67 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
166 |
Q |
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| T |
19144266 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19144365 |
T |
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| Q |
167 |
tagcaattgaaatagttccagcattagcactaccaaa |
203 |
Q |
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| T |
19144366 |
cagggagtgaaatagttccagcattggcactaccaaa |
19144402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 19148727 - 19148591
Alignment:
| Q |
67 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
166 |
Q |
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| T |
19148727 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19148628 |
T |
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| Q |
167 |
tagcaattgaaatagttccagcattagcactaccaaa |
203 |
Q |
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| T |
19148627 |
cagggagtgaaatagttccagcattggcactaccaaa |
19148591 |
T |
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