View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_7 (Length: 644)
Name: NF17668_low_7
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 49 - 351
Target Start/End: Complemental strand, 29049463 - 29049157
Alignment:
| Q |
49 |
acatcatgaaaggttaaaatataatttaaaataagtatttaaaattactaagtgtgttaaagggataaacataacatatttatgtagcga----agagat |
144 |
Q |
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| T |
29049463 |
acatcatgaaaggttaaaatataatttaaaataagtatttaaaattactaagtgtgttaaagggataaacataacatattcatgtagcgatcgaagagat |
29049364 |
T |
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| Q |
145 |
gtttaaaaatgattcttaatgtaggaagagttttaaaactccataagtgttaatatattaagttaatgtaaagagagaaaaatatggttaatattctcaa |
244 |
Q |
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| T |
29049363 |
gtttaaaaatgattcttaatgtaggaagagttttaaaactccataagtgttaatatattaagttaatgtaaagagagaaaaatatggttaatattctcaa |
29049264 |
T |
|
| Q |
245 |
gtttatctatgttataatcttctttattttcatgttttttgttttaataaacgttgatggccatggtaagcaaatttttcatcttttctaaattttaatg |
344 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29049263 |
gtttatctatgttataatcttctttattctcatgttttttgttttaatagacgttgatggccatggtaagcaaatttttcatcttttctaaattttcatg |
29049164 |
T |
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| Q |
345 |
tttactc |
351 |
Q |
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||||||| |
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| T |
29049163 |
tttactc |
29049157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 405 - 627
Target Start/End: Complemental strand, 29049106 - 29048884
Alignment:
| Q |
405 |
caccacagtacttgttgaatgtattgagaacaacgattgtgaaaaaggaatgtgtaaatttccttttattgtgaggtgcttaatggaccaatgtaaatgt |
504 |
Q |
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| T |
29049106 |
caccacagtacttgttgaatgtattgagaacaacgattgtgaaaaaggaatgtgtaaatttccttttattgtgaggtgcttaatggaccaatgtaaatgt |
29049007 |
T |
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| Q |
505 |
gttcgtatacacaacctaatatagaaggagcatacctaagaaaaagctcgtgaggggaaaatgaactctatcaacagcaaaagatttatgcaagatagct |
604 |
Q |
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| T |
29049006 |
gttcgtatacacaacctaatatagaaggagcatacctaagaaaaagctcggaaggggagaatgaactctatcaatagcaaaagatttaagcaagatagct |
29048907 |
T |
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| Q |
605 |
tccactaaaatattacatgagtt |
627 |
Q |
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| T |
29048906 |
tccactaaaatattacatgagtt |
29048884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 482
Target Start/End: Complemental strand, 27878266 - 27878224
Alignment:
| Q |
440 |
attgtgaaaaaggaatgtgtaaatttccttttattgtgaggtg |
482 |
Q |
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| T |
27878266 |
attgtgaaatagctatgtgtaaatttccttttattgtgaggtg |
27878224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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