View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_9 (Length: 541)

Name: NF17668_low_9
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_9
NF17668_low_9
[»] chr6 (23 HSPs)
chr6 (32-217)||(13606652-13606832)
chr6 (378-517)||(13606515-13606654)
chr6 (269-355)||(12836885-12836971)
chr6 (268-362)||(31412188-31412282)
chr6 (279-353)||(9536844-9536918)
chr6 (268-355)||(28099309-28099396)
chr6 (269-366)||(21910272-21910368)
chr6 (269-355)||(12411215-12411301)
chr6 (265-364)||(25084097-25084196)
chr6 (269-341)||(28933205-28933277)
chr6 (270-344)||(1534320-1534394)
chr6 (270-363)||(278459-278552)
chr6 (269-329)||(423722-423782)
chr6 (270-342)||(6062110-6062182)
chr6 (269-340)||(21028845-21028914)
chr6 (269-340)||(21028982-21029051)
chr6 (269-357)||(31107479-31107567)
chr6 (266-341)||(3237984-3238058)
chr6 (220-270)||(15614683-15614733)
chr6 (230-267)||(12411139-12411176)
chr6 (218-253)||(31412102-31412137)
chr6 (217-267)||(21910183-21910233)
chr6 (220-264)||(31107609-31107653)
[»] chr8 (25 HSPs)
chr8 (268-366)||(4125001-4125099)
chr8 (268-366)||(2743999-2744097)
chr8 (270-355)||(7839241-7839326)
chr8 (269-351)||(12958077-12958159)
chr8 (269-365)||(19715703-19715800)
chr8 (270-353)||(30055991-30056074)
chr8 (269-348)||(30936071-30936150)
chr8 (269-366)||(13468722-13468819)
chr8 (308-366)||(39086858-39086916)
chr8 (216-267)||(2743910-2743961)
chr8 (269-332)||(15682996-15683059)
chr8 (217-267)||(30935982-30936032)
chr8 (218-270)||(4125134-4125186)
chr8 (297-366)||(8521793-8521861)
chr8 (269-341)||(36994502-36994574)
chr8 (269-320)||(8034152-8034203)
chr8 (268-314)||(29284971-29285017)
chr8 (218-267)||(39086797-39086846)
chr8 (270-354)||(43003725-43003809)
chr8 (104-154)||(34972198-34972248)
chr8 (230-267)||(13468858-13468895)
chr8 (310-362)||(16700577-16700630)
chr8 (298-343)||(24988595-24988640)
chr8 (230-267)||(35206991-35207028)
chr8 (291-355)||(40320185-40320249)
[»] chr4 (34 HSPs)
chr4 (268-366)||(31307043-31307141)
chr4 (269-362)||(38766156-38766249)
chr4 (268-364)||(51626285-51626381)
chr4 (268-362)||(9012336-9012430)
chr4 (268-366)||(46016215-46016313)
chr4 (270-366)||(33529325-33529421)
chr4 (269-355)||(14854672-14854758)
chr4 (269-366)||(35972410-35972507)
chr4 (269-355)||(45994589-45994675)
chr4 (268-348)||(13948587-13948667)
chr4 (269-353)||(35334088-35334172)
chr4 (216-346)||(25768685-25768816)
chr4 (268-353)||(46250545-46250630)
chr4 (284-355)||(15133457-15133528)
chr4 (217-267)||(31307179-31307229)
chr4 (268-355)||(32005134-32005221)
chr4 (216-267)||(45994499-45994550)
chr4 (269-341)||(13686668-13686741)
chr4 (273-365)||(18841556-18841649)
chr4 (325-362)||(37241357-37241394)
chr4 (269-365)||(7096163-7096258)
chr4 (273-352)||(14042900-14042979)
chr4 (269-364)||(31308364-31308459)
chr4 (216-267)||(35972320-35972371)
chr4 (269-332)||(47023469-47023532)
chr4 (269-355)||(38844156-38844242)
chr4 (230-267)||(10199217-10199254)
chr4 (218-267)||(14854584-14854633)
chr4 (270-364)||(16994158-16994254)
chr4 (269-353)||(17135163-17135247)
chr4 (269-345)||(45695806-45695882)
chr4 (270-344)||(36990093-36990167)
chr4 (221-267)||(38766071-38766117)
chr4 (217-267)||(51853676-51853726)
[»] chr5 (21 HSPs)
chr5 (268-355)||(5123486-5123573)
chr5 (268-366)||(10591993-10592091)
chr5 (268-365)||(31113400-31113497)
chr5 (269-362)||(30784967-30785060)
chr5 (269-355)||(22187986-22188070)
chr5 (266-339)||(36212960-36213033)
chr5 (269-355)||(29553606-29553692)
chr5 (279-366)||(25983742-25983829)
chr5 (216-270)||(30785096-30785150)
chr5 (218-267)||(10591906-10591955)
chr5 (217-270)||(28023553-28023606)
chr5 (265-366)||(35774648-35774749)
chr5 (291-366)||(373741-373816)
chr5 (297-364)||(18244679-18244746)
chr5 (268-331)||(18909313-18909376)
chr5 (268-362)||(12336009-12336103)
chr5 (309-343)||(22402074-22402108)
chr5 (269-338)||(2798320-2798389)
chr5 (269-338)||(2804487-2804556)
chr5 (270-363)||(10795298-10795391)
chr5 (317-354)||(12682750-12682787)
[»] chr7 (40 HSPs)
chr7 (268-366)||(29059871-29059969)
chr7 (268-366)||(31492169-31492267)
chr7 (269-362)||(21747021-21747114)
chr7 (268-366)||(19477229-19477324)
chr7 (268-365)||(11486722-11486819)
chr7 (273-362)||(37339714-37339803)
chr7 (268-329)||(14545009-14545070)
chr7 (268-362)||(42741790-42741883)
chr7 (269-354)||(20207564-20207649)
chr7 (269-355)||(28537457-28537539)
chr7 (278-362)||(31776494-31776578)
chr7 (218-267)||(21747152-21747201)
chr7 (299-355)||(28665187-28665243)
chr7 (273-327)||(13254117-13254171)
chr7 (217-267)||(19477362-19477412)
chr7 (269-355)||(35707913-35707999)
chr7 (269-364)||(46373740-46373837)
chr7 (218-267)||(29059784-29059833)
chr7 (216-267)||(13254214-13254265)
chr7 (276-355)||(24172283-24172362)
chr7 (216-263)||(28537367-28537414)
chr7 (270-364)||(3231287-3231381)
chr7 (269-343)||(8839281-8839355)
chr7 (220-270)||(42741922-42741972)
chr7 (278-343)||(29428792-29428857)
chr7 (272-362)||(32469986-32470078)
chr7 (310-363)||(36821060-36821113)
chr7 (309-366)||(45778971-45779028)
chr7 (270-366)||(23933628-23933724)
chr7 (218-267)||(8839394-8839443)
chr7 (269-357)||(28828751-28828839)
chr7 (220-263)||(2657953-2657996)
chr7 (216-267)||(7265426-7265477)
chr7 (216-263)||(32469907-32469954)
chr7 (217-264)||(40099388-40099435)
chr7 (233-267)||(31492097-31492131)
chr7 (291-365)||(33299168-33299242)
chr7 (268-345)||(1424639-1424716)
chr7 (230-267)||(5905813-5905850)
chr7 (267-331)||(7265325-7265389)
[»] chr2 (41 HSPs)
chr2 (267-366)||(5394461-5394560)
chr2 (265-364)||(42745095-42745194)
chr2 (270-355)||(17981566-17981650)
chr2 (279-362)||(25423821-25423904)
chr2 (268-364)||(31579208-31579304)
chr2 (276-366)||(37179978-37180068)
chr2 (269-353)||(9438126-9438210)
chr2 (291-366)||(37092172-37092247)
chr2 (269-353)||(18105353-18105436)
chr2 (265-351)||(7020352-7020437)
chr2 (297-363)||(17655756-17655824)
chr2 (272-362)||(12233056-12233146)
chr2 (271-364)||(993822-993915)
chr2 (285-354)||(14551557-14551626)
chr2 (271-364)||(38372973-38373064)
chr2 (269-306)||(12133267-12133304)
chr2 (218-267)||(28365928-28365977)
chr2 (218-267)||(37568840-37568889)
chr2 (218-267)||(44732686-44732735)
chr2 (269-338)||(44752199-44752268)
chr2 (270-342)||(39401070-39401142)
chr2 (269-331)||(14121894-14121956)
chr2 (269-343)||(38743805-38743879)
chr2 (218-263)||(31579346-31579391)
chr2 (293-362)||(38464046-38464115)
chr2 (218-267)||(42745229-42745278)
chr2 (279-355)||(13835445-13835521)
chr2 (316-355)||(1682136-1682175)
chr2 (220-267)||(7020471-7020518)
chr2 (216-267)||(9438249-9438300)
chr2 (217-267)||(5394375-5394425)
chr2 (217-263)||(12133347-12133393)
chr2 (217-267)||(17981476-17981526)
chr2 (291-352)||(3562181-3562242)
chr2 (270-355)||(14412789-14412874)
chr2 (218-267)||(19252605-19252654)
chr2 (104-149)||(33029990-33030035)
chr2 (268-366)||(35476239-35476339)
chr2 (269-305)||(7157565-7157601)
chr2 (338-366)||(33757104-33757132)
chr2 (268-300)||(44732616-44732648)
[»] chr1 (34 HSPs)
chr1 (269-356)||(42297429-42297516)
chr1 (269-366)||(16756149-16756246)
chr1 (269-366)||(36806678-36806775)
chr1 (269-366)||(46864158-46864255)
chr1 (273-364)||(15642526-15642617)
chr1 (268-365)||(18428120-18428216)
chr1 (268-355)||(28724738-28724825)
chr1 (273-365)||(44913180-44913272)
chr1 (269-355)||(9780977-9781063)
chr1 (272-365)||(12035620-12035713)
chr1 (270-355)||(22022188-22022273)
chr1 (290-366)||(49071665-49071741)
chr1 (269-355)||(7242795-7242881)
chr1 (273-362)||(10367575-10367664)
chr1 (269-364)||(32534150-32534244)
chr1 (309-366)||(6607669-6607728)
chr1 (269-361)||(10750665-10750756)
chr1 (216-264)||(22022097-22022145)
chr1 (272-352)||(39547355-39547435)
chr1 (277-364)||(2044472-2044559)
chr1 (269-320)||(36522259-36522310)
chr1 (270-320)||(11530664-11530714)
chr1 (269-363)||(31733672-31733765)
chr1 (218-267)||(16756061-16756110)
chr1 (269-341)||(33721007-33721079)
chr1 (216-267)||(14500371-14500422)
chr1 (216-267)||(17600611-17600662)
chr1 (217-263)||(28724651-28724697)
chr1 (269-341)||(10841084-10841157)
chr1 (268-333)||(24801447-24801512)
chr1 (269-366)||(25655241-25655338)
chr1 (268-329)||(32883561-32883622)
chr1 (230-267)||(45806227-45806264)
chr1 (270-366)||(45806304-45806400)
[»] scaffold0182 (1 HSPs)
scaffold0182 (268-366)||(26397-26495)
[»] chr3 (33 HSPs)
chr3 (269-355)||(20861315-20861401)
chr3 (269-366)||(30995942-30996039)
chr3 (269-366)||(48204288-48204385)
chr3 (268-353)||(27763787-27763872)
chr3 (269-364)||(38331195-38331290)
chr3 (268-366)||(1642672-1642770)
chr3 (269-362)||(55123164-55123257)
chr3 (289-366)||(8757431-8757508)
chr3 (269-366)||(25224766-25224863)
chr3 (265-365)||(22288298-22288398)
chr3 (265-366)||(40294675-40294776)
chr3 (269-366)||(46725492-46725588)
chr3 (310-366)||(40318426-40318482)
chr3 (269-360)||(48210943-48211034)
chr3 (268-339)||(14352624-14352694)
chr3 (220-270)||(38331109-38331159)
chr3 (269-355)||(39950279-39950365)
chr3 (218-267)||(30996078-30996127)
chr3 (270-366)||(15283139-15283235)
chr3 (269-360)||(43621294-43621386)
chr3 (217-267)||(38088613-38088663)
chr3 (291-353)||(44941255-44941316)
chr3 (218-267)||(25224678-25224727)
chr3 (270-366)||(25739155-25739252)
chr3 (220-267)||(46604673-46604720)
chr3 (265-363)||(11767173-11767271)
chr3 (217-267)||(14352532-14352582)
chr3 (291-333)||(15446085-15446127)
chr3 (271-365)||(22288590-22288684)
chr3 (270-344)||(30601658-30601732)
chr3 (230-271)||(26581870-26581911)
chr3 (230-267)||(48204424-48204461)
chr3 (110-154)||(50652521-50652565)
[»] scaffold0009 (2 HSPs)
scaffold0009 (272-355)||(27213-27296)
scaffold0009 (223-267)||(32377-32421)
[»] scaffold0013 (1 HSPs)
scaffold0013 (298-365)||(29130-29197)
[»] scaffold0071 (1 HSPs)
scaffold0071 (291-333)||(16065-16107)
[»] scaffold0020 (1 HSPs)
scaffold0020 (218-263)||(167834-167879)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 13606832 - 13606652
Alignment:
Q  32 cagtgtgtaaatagagtgttgaataaattttaatagtgtggaaaaaatacaagggatgggtatatatctttggagcaatgatatttgtacatctaaaaaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||    
T  13606832 cagtgtgtaaatagagtgttgaataaattttaatagtgtggaaaaaatacaagggatgggtatatatctttcgagcaatgatatttgtacat------aa 13606739  T
Q  132 tgacaattttgatgacaattttg-nnnnnnnnnngttagtaaaaaataataggaagagaatatcatgtgattataaaaaagaaagtt 217  Q
    |||||| ||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13606738 tgacaactttgatgacaattttgtttttttttttgttagtaaaaaataataggaagagaatatcatgtgattataaaaaagaaagtt 13606652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 13606654 - 13606515
Alignment:
Q  378 gttgtccaaaaattatcacaaaatagttgatatctctataattcctagatagtggatttaaataagtgcgggtctcacagaaaacattataccgtatcnn 477  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  13606654 gttgtccaaaaattatcacaaaatagttgatatctctataatttctagatagttgatttaaataagtgcgggtctcacagaaaacattataccgtatctt 13606555  T
Q  478 nnnnngtttgaaagagagttgaaaaacattataatattct 517  Q
         |||||||||||||||||||||||||||||||||||    
T  13606554 tttttgtttgaaagagagttgaaaaacattataatattct 13606515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 12836971 - 12836885
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||||  |||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12836971 gttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacc 12836885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 31412188 - 31412282
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||| ||||||||| ||||||||| | ||||||    
T  31412188 tgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgattta 31412282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 9536844 - 9536918
Alignment:
Q  279 ttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 28099309 - 28099396
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||| |||||||||   || |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  28099309 tgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 21910272 - 21910368
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||| ||||| ||||||  ||||| ||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21910272 gttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacc 21910368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 12411215 - 12411301
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||| |||| |||||| ||||||  || |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  12411215 gttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacc 12411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 25084097 - 25084196
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||||||||||||| || | |||||||  ||||||||||||||||| |||||||||  ||||||  ||||  | |||||| ||||||||    
T  25084097 caatgttaaaactcttagggagagcttgtcatccatttaagttccacaatgctcgagagattagtctatgcagttatgcgcataagatacccgatttaca 25084196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 28933205 - 28933277
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    ||||||| |||||| |||||  ||||| ||||||||||||||||||||||||| || |||| |||||||||||    
T  28933205 gttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgc 28933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 1534320 - 1534394
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcg 344  Q
    |||||||||||||||||||| || || ||||||| ||  |||||||||||||| |||  ||||||||||||||||    
T  1534320 ttaaaactcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagttgcgcg 1534394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 278459 - 278552
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 363  Q
    |||||||||||| ||||||  |||||||||||| ||| ||||||  ||| |||||||||||  | ||||||| | ||||||||||| |||||||    
T  278459 ttaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttac 278552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 423722 - 423782
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagt 329  Q
    |||||||||||||| || |  |||||||||||||| || ||||||||||||||||||||||    
T  423722 gttaaaactcttagagataaactgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 6062110 - 6062182
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcg 342  Q
    |||||||||||||| ||||| |||||| ||||||||| | |||| | |||| |||||||||| ||||||||||    
T  6062110 ttaaaactcttaggaagagcttgccgttcatttgggtcctacaacgttcgatggattagtcttcgcagttgcg 6062182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 21028914 - 21028845
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttg 340  Q
    ||||||||||||||  ||||  ||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  21028914 gttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 21029051 - 21028982
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttg 340  Q
    ||||||||||||||  ||||  ||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  21029051 gttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 31107567 - 31107479
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctg 357  Q
    |||||||||||| |||||||| | |||||||||||  | |||||||  ||||| |||||||||| | | |||||||| |||||||||||    
T  31107567 gttaaaactctttgggagagcttaccgtccatttgattcccacaatattcgagagattagtctctgtaattgcgcgcagaggatacctg 31107479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 3237984 - 3238058
Alignment:
Q  266 aatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    ||||||||||||||||||| || | |||||| |||||  ||||||||||  ||||||||||||||||| |||||||    
T  3237984 aatgttaaaactcttaggg-gaacttgccgttcatttaagttccacaataatcgagggattagtctccacagttgc 3238058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 15614733 - 15614683
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||||||||    
T  15614733 ccaagagcgcttatatgagatggaacgagtctcttctaacttaaccaatgt 15614683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 12411139 - 12411176
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12411139 ttagatgagatggaacaggtctcttctaacttaaccaa 12411176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 31412102 - 31412137
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctct 253  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31412102 acccaagagcacttagatgagatggaacgggtctct 31412137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 21910183 - 21910233
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| ||||||||||||| |||  |||||||||| |||||||||    
T  21910183 tacccaagagcgtttagatgagatgaaacaagtctcttctagcttaaccaa 21910233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 31107653 - 31107609
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaac 264  Q
    |||| ||| ||||||||||||| || |||||||||||||||||||    
T  31107653 ccaatagcgtttagatgagatgaaatgggtctcttctaacttaac 31107609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 4125099 - 4125001
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4125099 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacacc 4125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 2743999 - 2744097
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  2743999 tgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 2744097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 7839326 - 7839241
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 7839241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 12958159 - 12958077
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggagga 351  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  12958159 gttaaaactcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 19715800 - 19715703
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcga-gggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||||| ||||||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  19715800 gttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacac 19715703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 30056074 - 30055991
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||| |||||    
T  30056074 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggata 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 30936071 - 30936150
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcgga 348  Q
    ||||||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||    
T  30936071 gttaaaactcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcgga 30936150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 13468819 - 13468722
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||| ||||| |||||| ||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||    
T  13468819 gttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacc 13468722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 39086858 - 39086916
Alignment:
Q  308 ccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39086858 ccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 2743910 - 2743961
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2743910 ttacccaagagcatttagatgagatggaacgggtctcttctagcttaaccaa 2743961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 15682996 - 15683059
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctc 332  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  15682996 gttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 30935982 - 30936032
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30935982 tacccaagagcacttagatgagatggaacgggtctcttctaacttaaccaa 30936032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4125186 - 4125134
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  4125186 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaatgt 4125134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 8521793 - 8521861
Alignment:
Q  297 ccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacacc 8521861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 36994574 - 36994502
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    ||||||||||||| ||||||  ||| | |||||||||| |||||| |||||||||||||||||| ||||||||    
T  36994574 gttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 8034203 - 8034152
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcga 320  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||| |||||    
T  8034203 gttaaaactcttagggagagcttgcagtccatttgggtcccacaatactcga 8034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 29284971 - 29285017
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaat 314  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  29284971 tgttaaaactcttatggagagcttgcagtccatttgggttccacaat 29285017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 39086797 - 39086846
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  39086797 acccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 39086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 43003725 - 43003809
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 354  Q
    |||||||||||||||||||  || ||| ||||||||||| |||| | |||||| |||||| |||  ||||| ||||||| |||||    
T  43003725 ttaaaactcttagggagagtatgtcgttcatttgggttctacaaggttcgaggaattagtatccatagttgtgcgcggatgatac 43003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 34972248 - 34972198
Alignment:
Q  104 gagcaatgatatttgtacatctaaaaaatgacaattttgatgacaattttg 154  Q
    |||||||||||||||||||||||   |||||||| |||| |||||||||||    
T  34972248 gagcaatgatatttgtacatctatttaatgacaactttggtgacaattttg 34972198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 13468895 - 13468858
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaa 13468858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 16700630 - 16700577
Alignment:
Q  310 acaatgctcgagggattagtctccgca-gttgcgcgcggaggatacctgattta 362  Q
    |||| |||||||| |||||||||  || ||||||||||||||||||||||||||    
T  16700630 acaaagctcgaggaattagtctctacaagttgcgcgcggaggatacctgattta 16700577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 24988595 - 24988640
Alignment:
Q  298 catttgggttccacaatgctcgagggattagtctccgcagttgcgc 343  Q
    |||||| || ||||||| ||||||||||||||||||||| ||||||    
T  24988595 catttgagtcccacaatactcgagggattagtctccgcaattgcgc 24988640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 35206991 - 35207028
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  35206991 ttagatgagatgaaacaggtctcttctaacttaaccaa 35207028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 40320185 - 40320249
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||| |||||| | |||| ||||||||| |||||||||| | |||||  |||||||||||||    
T  40320185 tgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 31307141 - 31307043
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31307141 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31307043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 38766156 - 38766249
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38766156 gttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattta 38766249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 51626381 - 51626285
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  51626381 tgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 9012336 - 9012430
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||| ||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9012336 tgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattta 9012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 46016215 - 46016313
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||| ||||||||| |||||||||| ||||||||||    
T  46016215 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacacc 46016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 33529325 - 33529421
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacc 33529421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 14854672 - 14854758
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||||||||| ||||| |||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14854672 gttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 35972410 - 35972507
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||| ||||||||||  ||||| |||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  35972410 gttaaaactattagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacacc 35972507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 45994589 - 45994675
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||||||| || ||||||||||  ||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  45994589 gttaaaactcttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacc 45994675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 13948667 - 13948587
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcgga 348  Q
    ||||||||||||||||||||| || |||||||||||  |  |||||||||||||||||||||||| |||||||||||||||    
T  13948667 tgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 35334172 - 35334088
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    |||||||||||||| ||||| | |||| |||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||    
T  35334172 gttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggata 35334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 25768816 - 25768685
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt--taaaactcttagggagagcctgccgtccatttgggttccacaa 313  Q
    ||||||||||||  ||||||||||||||||||||||||||||  |||| ||||||  | |||||||||  ||||   ||||| |||||||||| ||||||    
T  25768816 ttacccaagagcgcttagatgagatggaacgggtctcttctagtttaatcaatgtactgaaactcttacagaga-tttgccgcccatttgggtgccacaa 25768718  T
Q  314 tgctcgagggattagtctccgcagttgcgcgcg 346  Q
    |||| || |||||||||||| || |||||||||    
T  25768717 tgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 46250630 - 46250545
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    |||||||||||||| ||| ||||||||| |||||||||| |||| |||||||| | |||||||||||| |||| ||| ||||||||    
T  46250630 tgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 15133457 - 15133528
Alignment:
Q  284 gagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||| || ||||| ||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  15133457 gagagcttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 31307229 - 31307179
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  31307229 tacccaagagcacttagatgagatggaacgggtctcttctagcttaaccaa 31307179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 32005221 - 32005134
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||||||||| |||||| | |||| | |  || |||||||||| |||||||||||||| ||  ||||||||||||||    
T  32005221 tgttaaaactcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtctccgcaattatgcgcggaggatacc 32005134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 45994499 - 45994550
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  45994499 ttacccaagagcgtttagatgagatggaacaggtctcttctagcttaaccaa 45994550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 13686668 - 13686741
Alignment:
Q  269 gttaaaactctta-gggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    ||||||||||||| |||||||  ||||||||||||||||  ||||| ||||||| ||||||||||| |||||||    
T  13686668 gttaaaactcttaagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 18841556 - 18841649
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||||| ||||  ||||| | |||||| | | |||| |||| |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  18841556 aaactcttaggtagagtttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 37241394 - 37241357
Alignment:
Q  325 ttagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattta 37241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 7096163 - 7096258
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||||||||||||||| | ||| |||||| |||   ||||||||| || ||||||||| | ||||||| |||||| |||||| |||||||||    
T  7096163 gttaaaactcttagggagagcttaccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgcacgcgga-gatacccgatttacac 7096258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 14042900 - 14042979
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 352  Q
    |||||||| |||||| | || ||||||||||| ||||||||||||| ||||||| |||||||  ||| ||||| ||||||    
T  14042900 aaactcttggggagaacatgtcgtccatttggattccacaatgctcaagggatttgtctccgtggttacgcgcagaggat 14042979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 31308364 - 31308459
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||| |||| |||||||| |||| ||| |||||||| | ||||||||||||  | |||||| | |||||| |||||  |||||||    
T  31308364 gttaaaactcttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttaca 31308459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 35972320 - 35972371
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  35972320 ttacccaagagcgcttagatgagatggaacgggcctcttctagcttaaccaa 35972371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 47023469 - 47023532
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctc 332  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||  ||||| |||||||||||    
T  47023469 gttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 38844242 - 38844156
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||| |||| |||||| |||||||    |||||||||||||| ||||||||||  | ||| ||||| |||||||||    
T  38844242 gttaaaactcttaggaagagtctgccgcccatttgacccccacaatgctcgagagattagtctctactgttacgcgcagaggatacc 38844156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 10199254 - 10199217
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  10199254 ttagatgagatggaacgggtctcttataacttaaccaa 10199217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 14854584 - 14854633
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  14854584 acccaagagcgcttagatgagatggaacggttctcttctagcttaaccaa 14854633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 16994158 - 16994254
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttg--cgcgcggaggatacctgatttaca 364  Q
    |||||||||| | ||||||  ||| | |||||| ||||||||||  |||||| ||||||||||||||||||  || || ||||||||| ||||||||    
T  16994158 ttaaaactctaaaggagagtttgctgcccatttaggttccacaagactcgagtgattagtctccgcagttgcacgtgcagaggatacccgatttaca 16994254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 17135163 - 17135247
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||||||||||||||||||  |||||  |||||| || ||| ||  |||||||||||||||||   |||||||| |||||||||    
T  17135163 gttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctcaaaagttgcgcacggaggata 17135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 45695882 - 45695806
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgc 345  Q
    ||||||| | ||| ||||||| || ||||||||||||||| |||| ||| || ||||||||||  ||||||||||||    
T  45695882 gttaaaatttttaaggagagcttgtcgtccatttgggttctacaaggcttgatggattagtctatgcagttgcgcgc 45695806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 36990167 - 36990093
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcg 344  Q
    ||||||||||| |||| ||  |||||||||||||  | ||||||||||||||| |||||| | ||||||| ||||    
T  36990167 ttaaaactcttggggaaagtttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagttacgcg 36990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 38766071 - 38766117
Alignment:
Q  221 caagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||  ||||||||||||||||| |||||||||| |||||||||    
T  38766071 caagagcgcttagatgagatggaacgagtctcttctagcttaaccaa 38766117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 51853676 - 51853726
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||  ||||||||||| ||| | ||||||||||||||||||||    
T  51853676 tacccaagagcgcttagatgagatagaatgagtctcttctaacttaaccaa 51853726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 5123573 - 5123486
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5123573 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 5123486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 10591993 - 10592091
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  10591993 tgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacacc 10592091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 31113400 - 31113497
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    |||||||||||||||||||||||| ||| |||||||| | ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  31113400 tgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacac 31113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 30785060 - 30784967
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||||||||||||||||||  ||||| ||||||| |||  ||||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  30785060 gttaaaactcttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 22188070 - 22187986
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||  |||||| |||||| | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  22188070 gttaaaactctt--ggagagtctgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacc 22187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 36212960 - 36213033
Alignment:
Q  266 aatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagtt 339  Q
    |||||||||||||||||||||||  ||||| |||||| ||| ||||||||||||||||||| ||||||||||||    
T  36212960 aatgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 29553606 - 29553692
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||||||||  || ||||||||||||| ||| ||||||| || |||||||||| ||||||| ||| ||||||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacc 29553692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 25983742 - 25983829
Alignment:
Q  279 ttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||| ||||| ||||||| || ||| |||| ||||| ||||||||||||||||||| | ||||||||||| | ||||||||    
T  25983742 ttagggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacc 25983829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 30785150 - 30785096
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  30785150 ttacccaagagcatttagatgagatggaacgagtctcttctagcttaatcaatgt 30785096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 10591906 - 10591955
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  10591906 acccaagagcacttagatgagatggaacgggtctcttctagattaaccaa 10591955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 28023606 - 28023553
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    |||||||||||  |||||||||||||||||| ||||||||| ||||||||||||    
T  28023606 tacccaagagcgcttagatgagatggaacggatctcttctagcttaaccaatgt 28023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 35774648 - 35774749
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||||| |||||||||||| |||||  |||||| ||  |||||| ||||| | |||| ||||| ||||||| |||||| |||||| |||| |||    
T  35774648 caatgttaaaacacttagggagagcttgccgcacatttgagtctcacaatactcgatgaattaatctcctcagttgcacgcggaagatacccgattcaca 35774747  T
Q  365 cc 366  Q
    ||    
T  35774748 cc 35774749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 373816 - 373741
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||| ||||||||   |||||| || |||||||| ||||||||||||||| |||||||||||  |||||||||    
T  373816 tgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacacc 373741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 18244679 - 18244746
Alignment:
Q  297 ccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||||||||||| || ||| |||||||||||||||||||  || ||||||  ||||||||||    
T  18244679 ccatttgggttccacaatacttgagagattagtctccgcagttgctagcagaggatgtctgatttaca 18244746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 18909376 - 18909313
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtct 331  Q
    ||||||||||||||||||||   |||||  ||||||  | ||||||||||||||||||||||||    
T  18909376 tgttaaaactcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 12336103 - 12336009
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||||||  ||| || ||| || ||||| ||| ||||||||||| |   |||||| || ||||||||||| |||||||| ||||||||    
T  12336103 tgttaaaactcttaatgagggcttgctgttcattttggtcccacaatgctcaaaaaattagtttctgcagttgcgcgtggaggatatctgattta 12336009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 22402074 - 22402108
Alignment:
Q  309 cacaatgctcgagggattagtctccgcagttgcgc 343  Q
    ||||||||||||||||||| |||||||||||||||    
T  22402074 cacaatgctcgagggattaatctccgcagttgcgc 22402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 2798389 - 2798320
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagt 338  Q
    ||||||||| ||||||||||| | ||| |||||||| ||| ||||||||| || ||||| |||| |||||    
T  2798389 gttaaaacttttagggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcagt 2798320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 2804556 - 2804487
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagt 338  Q
    ||||||||| ||||||||||| | ||| |||||||| ||| ||||||||| || ||||| |||| |||||    
T  2804556 gttaaaacttttagggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcagt 2804487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 10795391 - 10795298
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 363  Q
    |||||||||| | |||||   ||||| |||||||||| ||||||   | ||||||||||| | || ||||||||| |||||||| |||||||||    
T  10795391 ttaaaactctaaaggagaatgtgccgcccatttgggtcccacaaaatttgagggattagtgttcgtagttgcgcgtggaggatatctgatttac 10795298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 12682750 - 12682787
Alignment:
Q  317 tcgagggattagtctccgcagttgcgcgcggaggatac 354  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  12682750 tcgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 29059871 - 29059969
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29059871 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 29059969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 31492169 - 31492267
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31492169 tgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31492267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 21747114 - 21747021
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  21747114 gttaaaactcttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 19477324 - 19477229
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||  |||||||||||| ||| ||||||||    
T  19477324 tgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagtt--gcgcggaggatagctggtttacacc 19477229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 11486819 - 11486722
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    |||||||||||||| | ||||| ||||| |||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||| | |||||||    
T  11486819 tgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacac 11486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 37339803 - 37339714
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||||||||| ||||| |||||| | |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattta 37339714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 14545009 - 14545070
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagt 329  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  14545009 tgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 42741883 - 42741790
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||||||||| ||||||||| ||||||  |||||||||| ||| ||| |||||||||||| |||| |||||||||||||||||||||| ||||||    
T  42741883 tgttaaaacttttagggagaacctgccacccatttgggt-ccataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 20207564 - 20207649
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 354  Q
    ||||||||||||| ||||||| |||||  ||||||| | | |||||||||||||||||||||||||||||||||| | ||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 28537457 - 28537539
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||||||||||||||| ||||||||||    | ||||| ||||||||||||||||||||||| |||| ||||||||    
T  28537457 gttaaaactcttagggagagcctgccgcccatttgggt----ccatgcttgagggattagtctccgcagttgcacgcgaaggatacc 28537539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 31776494 - 31776578
Alignment:
Q  278 cttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||||| || | |||||||||| ||||||| |||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  31776494 cttagggagagccagctgcccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggttta 31776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 21747201 - 21747152
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21747201 acccaagagcgtttagatgagatggaacgggtctcttctaacttaaccaa 21747152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 28665187 - 28665243
Alignment:
Q  299 atttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 28665243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 13254171 - 13254117
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggatta 327  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  13254171 aaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 19477412 - 19477362
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  19477412 tacccaagagcgtttagatgagatggaacgggtctcttctagcttaaccaa 19477362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 35707913 - 35707999
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||| ||||||||||| | ||||  |||||| | | | ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  35707913 gttaaaattcttagggagaacttgcctcccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacc 35707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 46373740 - 46373837
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagtt--gcgcgcggaggatacctgatttaca 364  Q
    |||||||||| |||||||||| ||||| | ||||||||  ||||||||||||| |||||||||  ||||||  ||||||||| |||||| ||||||||    
T  46373740 gttaaaactcgtagggagagcttgccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgatttaca 46373837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 29059784 - 29059833
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29059784 acccaagagcacttagatgagatggaacgggtctcttctagcttaaccaa 29059833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 13254265 - 13254214
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  13254265 ttacccaagagcgcttagatgagatggaacgggtctcttctagcttaaccaa 13254214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 24172283 - 24172362
Alignment:
Q  276 ctcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||| |||||| ||||| ||| |||| | ||||||||||||| ||||||||||  |||||||||||||||| |||||    
T  24172283 ctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 28537367 - 28537414
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  28537367 ttacccaagagcgcttagatgagatggaacgggtctcttctaacttaa 28537414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 3231287 - 3231381
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||| ||||||||||| || | ||||||| ||| |||||||| ||||| |||||| |||  ||||||  ||||||||||||| ||||||||    
T  3231287 ttaaaacttttagggagagcttgtcttccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 8839355 - 8839281
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgc 343  Q
    |||||||||||||||||||  |||||| | |||| | | ||||||| ||||||||||||||||||||| ||||||    
T  8839355 gttaaaactcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctccgcaattgcgc 8839281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 42741972 - 42741922
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  42741972 ccaagagcgtttagatgagatggaacaggtctcttctatcttaaccaatgt 42741922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 29428857 - 29428792
Alignment:
Q  278 cttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgc 343  Q
    |||||||||||  ||||| |||||||| | |||||||| |||||||||||||||| ||||||||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 362
Target Start/End: Original strand, 32469986 - 32470078
Alignment:
Q  272 aaaactcttagggagagcctgccgtccatttgggttccacaat--gctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    |||||| ||||||||| | ||||||||||||||||  ||||||  ||||||| ||||||| | ||||||||| ||||||||||| ||| ||||    
T  32469986 aaaacttttagggagaacttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggttta 32470078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  310 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 363  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| || |||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 45778971 - 45779028
Alignment:
Q  309 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||| |||||||||||||||||||||||||||   |||||||||||| ||||||||    
T  45778971 cacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacacc 45779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 23933724 - 23933628
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||| ||||||||||  ||||| |||||| ||||| ||||| || |||||||||||||| ||| |||| | | |||||||||  |||||||||    
T  23933724 ttaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctctgcaattgcacacagaggatacccaatttacacc 23933628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 8839443 - 8839394
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||||||    
T  8839443 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaa 8839394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 28828839 - 28828751
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctg 357  Q
    ||||||||||| || |||||  |  |||||||||||||  ||||| |||| | |||||||||| ||||||||| |||||||||| ||||    
T  28828839 gttaaaactctcagagagagtttatcgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggatccctg 28828751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 2657996 - 2657953
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||    
T  2657996 ccaagagcgcttagatgagatggaacgagtctcttctaacttaa 2657953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 7265477 - 7265426
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| |||| ||||||||  |||||||||||||| |||||||||    
T  7265477 ttacccaagagcgtttatatgagatgacacgggtctcttctagcttaaccaa 7265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 32469907 - 32469954
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    |||||||| ||| |||||||||||||||||| |||||||||| |||||    
T  32469907 ttacccaaaagcgtttagatgagatggaacgagtctcttctagcttaa 32469954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 40099435 - 40099388
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaac 264  Q
    ||||| |||||  |||||||||||||||||||||||||||| ||||||    
T  40099435 tacccgagagcgcttagatgagatggaacgggtctcttctagcttaac 40099388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 31492097 - 31492131
Alignment:
Q  233 gatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||||||||||||||| |||||||||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaa 31492131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 33299168 - 33299242
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||||||  ||| |||| ||||| | |||||||    
T  33299168 tgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacac 33299242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 1424639 - 1424716
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgc 345  Q
    |||||||||||||  |||||| ||   || ||||||||| ||||||  || ||| |||||||||||||||||||||||    
T  1424639 tgttaaaactcttgaggagagtctcttgttcatttgggtcccacaagacttgagagattagtctccgcagttgcgcgc 1424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 5905813 - 5905850
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  5905813 ttagatgagatagaacgagtctcttctaacttaaccaa 5905850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 7265389 - 7265325
Alignment:
Q  267 atgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtct 331  Q
    ||||||||||||||||||||||  ||| |  ||||||||| ||||||| |||||  |||||||||    
T  7265389 atgttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 366
Target Start/End: Original strand, 5394461 - 5394560
Alignment:
Q  267 atgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||    
T  5394461 atgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacc 5394560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 42745194 - 42745095
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||||||||||||||||| |||| | | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| | ||||||    
T  42745194 caatgttaaaactcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 17981566 - 17981650
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||| ||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  17981566 ttaaaactcttagggagagcttgccg-caatttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacc 17981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 25423821 - 25423904
Alignment:
Q  279 ttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattta 25423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 31579304 - 31579208
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||| |||||||||| |||||| ||||||  || ||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  31579304 tgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 37180068 - 37179978
Alignment:
Q  276 ctcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||  ||||| ||||||| || ||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  37180068 ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacacc 37179978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 9438210 - 9438126
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||||||||||||| ||| ||||||| ||||||| || |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  9438210 gttaaaactcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 37092247 - 37092172
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||| | ||||||||    
T  37092247 tgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 18105436 - 18105353
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||||| ||||| ||||||||||||| ||||||| ||  |||||| |||||||||||||||| |||||||||||||||||||||    
T  18105436 gttaaaattcttatggagagcctgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggata 18105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 7020437 - 7020352
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggagga 351  Q
    ||||||||||| ||||||||||| | ||||| |||||||||| | |||||||||||| ||||||||||  |||||||||||||||||    
T  7020437 caatgttaaaa-tcttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 17655756 - 17655824
Alignment:
Q  297 ccatttgggttccacaatgctcgagggattagtctccgcagttgc--gcgcggaggatacctgatttac 363  Q
    |||||||| |||||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttac 17655824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 12233146 - 12233056
Alignment:
Q  272 aaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||||| |||||  ||||| ||||||  ||| ||||||||||||||||||||||||| ||||| |||  ||||||||| |||||||    
T  12233146 aaaactcttagagagagtttgccgcccatttaagtttcacaatgctcgagggattagtctccacagttacgcttggaggatacttgattta 12233056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 993822 - 993915
Alignment:
Q  271 taaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||||| | ||||| |||||||||| | ||||| ||  | |||||||| ||||| |||||||| ||||||||||||| |||||    
T  993822 taaaactcttagggagaacttgccgcccatttgggtcctacaatactgaatggattagtttccgccgttgcgcgtggaggatacctgacttaca 993915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 14551557 - 14551626
Alignment:
Q  285 agagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 354  Q
    |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||    
T  14551557 agagtctgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatac 14551626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 38373064 - 38372973
Alignment:
Q  271 taaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||| ||||| ||||| ||||  |||| ||||||||||| ||| ||||||||   ||||||||||||||||||||| ||| ||||    
T  38373064 taaaactcttaggaagagcttgccgcccat--gggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacccgatataca 38372973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 12133304 - 12133267
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggt 306  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12133304 gttaaaactcttagggagagcctgccgtccatttgggt 12133267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 28365928 - 28365977
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  28365928 acccaagagcgcttagatgagatggaacgcgtctcttctaacttaaccaa 28365977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 37568889 - 37568840
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  37568889 acccaagagcacttagatgagatggaacgggtttcttctagcttaaccaa 37568840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 44732735 - 44732686
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  44732735 acccaagagcacttagatgagatggaacgggtctcttatagcttaaccaa 44732686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 44752268 - 44752199
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagt 338  Q
    |||||||||||| |||||||| ||||  | |||||||||| ||||| |||||||||||||||||| ||||    
T  44752268 gttaaaactctttgggagagcttgccaccaatttgggttctacaatactcgagggattagtctccacagt 44752199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 39401142 - 39401070
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcg 342  Q
    |||||||| |||||||||||  | ||||||||| ||| |||||||||||| | |||||| |||||||||||||    
T  39401142 ttaaaacttttagggagagctcgtcgtccatttaggtcccacaatgctcgtgagattagactccgcagttgcg 39401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 14121956 - 14121894
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtct 331  Q
    ||||||| |||||| |||| | ||||| ||||||| || ||||||||||||||||||||||||    
T  14121956 gttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 38743805 - 38743879
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgc 343  Q
    ||||||||| || |||||||| |||||  ||||||| |  |||||||||  ||||||||||||||||||||||||    
T  38743805 gttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 31579391 - 31579346
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||    
T  31579391 acccaagagcacttagatgagatgtaacgggtctcttctagcttaa 31579346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 38464046 - 38464115
Alignment:
Q  293 ccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||| ||||| || ||||||| |||||| |||||||||  ||| ||||||| |||||||||||||||||    
T  38464046 ccgtctatttgagtcccacaatactcgagtgattagtctttgcaattgcgcgtggaggatacctgattta 38464115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 42745278 - 42745229
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  ||||||||||||||||||||||||| || |||||||||    
T  42745278 acccaagagcgcttagatgagatggaacgggtctcttatagcttaaccaa 42745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 13835521 - 13835445
Alignment:
Q  279 ttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||| |||||| |||||| || |||||||| | ||||||||||| || ||||||| | | ||||||||||    
T  13835521 ttagggagagcttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 1682136 - 1682175
Alignment:
Q  316 ctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  1682136 ctcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 7020518 - 7020471
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||| |||||||||||| | |||||||||||||| |||||||||    
T  7020518 ccaagagcgtttagatgagattgcacgggtctcttctagcttaaccaa 7020471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 9438300 - 9438249
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||| ||||||||||||||||||  |||||| || |||||||||    
T  9438300 ttacccaagagcgtttagatgagatggaacgaatctcttttagcttaaccaa 9438249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 5394375 - 5394425
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||| ||||||  ||||||||||||||||| |||||||||| |||||||||    
T  5394375 taccaaagagcgcttagatgagatggaacgagtctcttctagcttaaccaa 5394425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 12133393 - 12133347
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    |||||||||||  ||||||||||||||||| |||||||||| |||||    
T  12133393 tacccaagagcgcttagatgagatggaacgagtctcttctagcttaa 12133347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 17981476 - 17981526
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||| |||  ||||||||||||||||| |||||||||| |||||||||    
T  17981476 tacccaatagcgcttagatgagatggaacgagtctcttctagcttaaccaa 17981526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 3562242 - 3562181
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 352  Q
    ||||| |||||||||| |||||| ||| |||| | |||||| ||||||||||||||| ||||    
T  3562242 tgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 14412789 - 14412874
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||| ||||||||||| ||  | |||| || || ||| ||||||| ||| ||||||||| ||||||| ||||| ||||||||    
T  14412789 ttaaaacttttagggagagcttgttgcccatctgtgtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 19252654 - 19252605
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||| |||||||||||||  ||||||||||| || |||||||||    
T  19252654 acccaagagcgtttagatgagatgatacgggtctcttttagcttaaccaa 19252605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 33029990 - 33030035
Alignment:
Q  104 gagcaatgatatttgtacatctaaaaaatgacaattttgatgacaa 149  Q
    |||||||||||||||||||||||   |||||||| |||||||||||    
T  33029990 gagcaatgatatttgtacatctatctaatgacaactttgatgacaa 33030035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 35476239 - 35476339
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcg--gaggatacctgatttacac 365  Q
    ||||||||||||| |||||||  || |||||||||||||  |||||  ||||| |||| ||| ||  | ||||||||||   ||||||||||||||||||    
T  35476239 tgttaaaactcttcgggagagtttgtcgtccatttgggtctcacaaaactcgaaggatcagtttctactgttgcgcgcgtaaaggatacctgatttacac 35476338  T
Q  366 c 366  Q
    |    
T  35476339 c 35476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 7157565 - 7157601
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttggg 305  Q
    ||||||||||||||||||||||||||| | |||||||    
T  7157565 gttaaaactcttagggagagcctgccgcctatttggg 7157601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 366
Target Start/End: Original strand, 33757104 - 33757132
Alignment:
Q  338 ttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||||    
T  33757104 ttgcgcgcggaggatacctgatttacacc 33757132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 44732648 - 44732616
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccat 300  Q
    |||||||||||||||||||||||||||| ||||    
T  44732648 tgttaaaactcttagggagagcctgccgcccat 44732616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 42297516 - 42297429
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacct 356  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42297516 gttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacct 42297429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 16756149 - 16756246
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  16756149 gttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacacc 16756246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 36806678 - 36806775
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||    
T  36806678 gttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacc 36806775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 46864158 - 46864255
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  46864158 gttaaaattcttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 15642526 - 15642617
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||||  ||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttaca 15642617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 18428216 - 18428120
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    |||||||||| |||||||||| |||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18428216 tgttaaaacttttagggagagtctgctgtccatttggcc-ccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 28724738 - 28724825
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||| |||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||||||||||||||||    
T  28724738 tgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacc 28724825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 44913180 - 44913272
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||||||||||| ||||| |||| ||||| |||||||||||||| |||||||||| |||||| ||||| |||||||||| ||||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacac 44913272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 9781063 - 9780977
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781063 gttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 12035620 - 12035713
Alignment:
Q  272 aaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||| |||| || ||| |||||  |||||||||    
T  12035620 aaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgatttacac 12035713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 22022188 - 22022273
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||| | ||||  |||||||||| |||||||  ||||||||||||||||||||||||| || ||||||||||    
T  22022188 ttaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacc 22022273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 49071665 - 49071741
Alignment:
Q  290 ctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||| | ||||||||||    
T  49071665 ctgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacacc 49071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 7242881 - 7242795
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||||| || ||  |||||||  |  || ||| ||||||||||||||||||||||||||||||||| ||||||    
T  7242881 gttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 10367575 - 10367664
Alignment:
Q  273 aaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||||| |||||| || ||| |||||||||| | ||||||||||| |||||| |||||||||||||| ||| || ||||| ||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcgaagaatacccgattta 10367664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 32534150 - 32534244
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||||||| |||||| | ||| ||||| ||  || |||||||||||| | |||||||||||| |||||||| ||||||||||| ||||||    
T  32534150 gttaaaactcttagagagagcttaccgcccattaggtctc-acaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 6607728 - 6607669
Alignment:
Q  309 cacaatgctcgagggattagtctccgcagttgcgcgcg--gaggatacctgatttacacc 366  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||||||| |||||||||||    
T  6607728 cacaatgctcgagggattagtctccgcagctgcacgcgtagaggatacttgatttacacc 6607669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 10750665 - 10750756
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattt 361  Q
    |||||||||||||||  | || ||||| |||||||| |  ||||||| |||||||||||||||   ||||||||||| |||||||||||||||    
T  10750665 gttaaaactcttaggt-gcgcttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 22022097 - 22022145
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaac 264  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  22022097 ttacccaagagcgtttagatgagatggaacaggtctcttctagcttaac 22022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 39547435 - 39547355
Alignment:
Q  272 aaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 352  Q
    ||||||||||||| ||| |||||| | |||| |||  ||||||| |||| |||||| ||||||||||||||||| ||||||    
T  39547435 aaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggat 39547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 2044472 - 2044559
Alignment:
Q  277 tcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||  | ||| | |||||||||||||||||||| || |||||||||| |||||| ||||  ||| ||||| ||||||||    
T  2044472 tcttagggagagattaccgcctatttgggttccacaatgctcaagagattagtctctgcagtttcgcgtagagaatacccgatttaca 2044559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 36522310 - 36522259
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcga 320  Q
    ||||||||||||||||||||  ||||||||||||| || |||||||||||||    
T  36522310 gttaaaactcttagggagagtttgccgtccatttgagtcccacaatgctcga 36522259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 11530664 - 11530714
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcga 320  Q
    |||||||||||| ||||||  ||||||||||||| ||||||||||||||||    
T  11530664 ttaaaactcttaaggagagtttgccgtccatttgagttccacaatgctcga 11530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 31733765 - 31733672
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 363  Q
    ||||||||||||||||||||  || ||||||| |||||  |||||  || || | |||||||||| |||||||||||||| |||| |||||||||    
T  31733765 gttaaaactcttagggagagtttgtcgtccatctgggtgtcacaagactggatgaattagtctccacagttgcgcgcgga-gatatctgatttac 31733672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 16756061 - 16756110
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  16756061 acccaagagcgcttagatgagatggaacggatctcttctagcttaaccaa 16756110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 33721007 - 33721079
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    |||||| |||||||||||||  |||||||||||||| | |||||| | ||||| ||||||||| |||| ||||    
T  33721007 gttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtcttcgcaattgc 33721079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 14500422 - 14500371
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||   ||||||| |||||||||||||||||||| |||||||||    
T  14500422 ttacccaagagtgcttagatgcgatggaacgggtctcttctagcttaaccaa 14500371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 17600662 - 17600611
Alignment:
Q  216 ttacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||| ||| |||||||||||||  |||||||||||||| |||||||||    
T  17600662 ttacccaaaagcgtttagatgagatgacacgggtctcttctagcttaaccaa 17600611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 28724651 - 28724697
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    |||||||||||  ||||||||||||||||| |||||||||| |||||    
T  28724651 tacccaagagcgcttagatgagatggaacgagtctcttctagcttaa 28724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 10841084 - 10841157
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccattt-gggttccacaatgctcgagggattagtctccgcagttgc 341  Q
    ||||||| ||||||||||| | ||||  |||||| |||| |||||||||| ||||||||| | |||||||||||    
T  10841084 gttaaaattcttagggagaacttgcctcccatttagggtcccacaatgcttgagggattaatttccgcagttgc 10841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 24801447 - 24801512
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctcc 333  Q
    |||||||||||||||||||||  | ||||||||||| || ||||||  ||| || |||||||||||    
T  24801447 tgttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 25655338 - 25655241
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||| |||||  ||||||||||||   |  |||||||||  || |||||||||| ||||||| || | || ||||||| |||||||||    
T  25655338 gttaaaactcttagagagagtttgccgtccatttaaatcacacaatgctaaagagattagtctctgcagttgtgcacagaagatacctaatttacacc 25655241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagt 329  Q
    |||||||||||||||||||||  ||||| ||||||||   ||||||  ||||||||||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 45806227 - 45806264
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  45806227 ttagatgagatagaacgggtctcttctatcttaaccaa 45806264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 45806304 - 45806400
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||| | ||| | ||||  ||  ||||||  ||||  |||||||||| |||||| |||| ||||||||| || ||||||||    
T  45806304 ttaaaactcttagggagagcataccgcctatttaagtctcacaatattcgaatgattagtctctgcagttacgcgtggaggatacatggtttacacc 45806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 26397 - 26495
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  26397 tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacacc 26495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 20861315 - 20861401
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  20861315 gttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacc 20861401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 30996039 - 30995942
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  30996039 gttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacc 30995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 48204385 - 48204288
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  48204385 gttaaaacccttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacc 48204288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 27763787 - 27763872
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  27763787 tgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 38331195 - 38331290
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    |||||||||||||| |||||| ||||| |||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  38331195 gttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttaca 38331290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 1642672 - 1642770
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||| |||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  1642672 tgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacacc 1642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 55123164 - 55123257
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 362  Q
    ||||||| ||||||||||||| |||   ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55123164 gttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgattta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 8757431 - 8757508
Alignment:
Q  289 cctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  8757431 cctgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 8757508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 25224766 - 25224863
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||||| ||||| | ||||| |||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||    
T  25224766 gttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacc 25224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 22288298 - 22288398
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||||||||||| | || |||||||||| ||| |||||| ||| ||| ||||||||| ||||||| |||||||||||||| | ||||||    
T  22288298 caatgttaaaactcttagggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttaca 22288397  T
Q  365 c 365  Q
    |    
T  22288398 c 22288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 40294675 - 40294776
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 364  Q
    ||||||||||||||||||||| ||| |||||  ||||||  | ||||||| ||||| |||||||||||||||||||||| |  |||||||| ||||||||    
T  40294675 caatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttaca 40294774  T
Q  365 cc 366  Q
    ||    
T  40294775 cc 40294776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 46725492 - 46725588
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    ||||||||||||||||| ||  ||| |||||| ||||| |||||||||| ||||||||||||||  ||||| |||||||||||||| || ||||||||    
T  46725492 gttaaaactcttagggatagtttgctgtccatctgggt-ccacaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacc 46725588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  310 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 48211034 - 48210943
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatt 360  Q
    ||||||||||||| ||||||| ||||||| |||| ||| ||||||| ||||||| |||  ||||||||||||| |||||| |||||| ||||    
T  48211034 gttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacccgatt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 14352624 - 14352694
Alignment:
Q  268 tgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagtt 339  Q
    |||||||||||||| ||||||| || ||||||||||| | || |||| ||||||||||||||||||||||||    
T  14352624 tgttaaaactcttacggagagcttgtcgtccatttggatacc-caatactcgagggattagtctccgcagtt 14352694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 38331109 - 38331159
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaaccaatgt 270  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  38331109 ccaagagcgcttagatgagatggatcgggtctcttctaacttaaccaatgt 38331159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 39950279 - 39950365
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    ||||||| | |||||||||  ||| ||| ||||||| | | ||||||||||| ||||||||||||||||||||  ||||||||||||    
T  39950279 gttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 30996127 - 30996078
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  30996127 acccaagagcgcttagatgagatggaacgggtctcttctatcttaaccaa 30996078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 15283139 - 15283235
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||| ||| ||  ||||| |||||||||| |||||||||||||| ||||||||| |  | |||| | ||||||| ||| ||||||||||    
T  15283139 ttaaaactcttatggaaagattgccgcccatttgggtcccacaatgctcgagagattagtcttcataattgcccacggaggagacccgatttacacc 15283235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 43621386 - 43621294
Alignment:
Q  269 gttaaaactcttagggagagcctgccgtccatttgggttccacaa-tgctcgagggattagtctccgcagttgcgcgcggaggatacctgatt 360  Q
    ||||||||| ||||||||||| ||||  ||||||  ||  ||||| ||||||||||||||||||| | |||||||||| ||||||||| ||||    
T  43621386 gttaaaacttttagggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagaggatacccgatt 43621294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 38088613 - 38088663
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||  |||||||||||| ||||||||||||||| |||||||||    
T  38088613 tacccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaa 38088663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 44941316 - 44941255
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 353  Q
    ||||| |||||||| | |||  |||||||||| ||||||||||||||||||||||||||||||    
T  44941316 tgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 25224678 - 25224727
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||||||    
T  25224678 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaa 25224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 25739155 - 25739252
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacctgatttacacc 366  Q
    |||||||||||||||||||  | ||| |||||||||| ||| ||  |||||   |||||||||||| ||||||| |||||||||||| | ||||||||    
T  25739155 ttaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacacc 25739252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 46604720 - 46604673
Alignment:
Q  220 ccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  46604720 ccaagagcgcttagatgagatggaacgagtctcttataacttaaccaa 46604673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 363
Target Start/End: Original strand, 11767173 - 11767271
Alignment:
Q  265 caatgttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 363  Q
    |||| |||||||||||||  || || ||||| ||||||| || |||||||  | || |||||||||| |||| || |||| |||||||||| |||||||    
T  11767173 caatattaaaactcttagcaagtgcttgccgcccatttgagtcccacaatatttgaaggattagtcttcgcaattacgcgtggaggatacccgatttac 11767271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 14352532 - 14352582
Alignment:
Q  217 tacccaagagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    |||||||||||  ||||||||||||||||  |||||||||| |||||||||    
T  14352532 tacccaagagcgcttagatgagatggaacaagtctcttctagcttaaccaa 14352582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 15446085 - 15446127
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctcc 333  Q
    ||||||||||||||||  |||||||||||| ||||||||||||    
T  15446085 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 22288590 - 22288684
Alignment:
Q  271 taaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    |||||||||||| |||| | || ||| |||||| ||| | |||| |||||   ||||||||| ||||||| |||||||||||||| | |||||||    
T  22288590 taaaactcttagtgagaacttgtcgtacatttgagttactcaatactcgacaaattagtctctgcagttgtgcgcggaggatacccggtttacac 22288684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 30601732 - 30601658
Alignment:
Q  270 ttaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcg 344  Q
    |||||||||||||||||||  | || || |||||| |||||||| | | ||  ||||||||||||||||||||||    
T  30601732 ttaaaactcttagggagagtttaccatctatttggattccacaaagtttgaacgattagtctccgcagttgcgcg 30601658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 26581911 - 26581870
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaatgtt 271  Q
    ||||||||||| | ||| ||||||||||||||||||||||||    
T  26581911 ttagatgagatagcacgagtctcttctaacttaaccaatgtt 26581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 48204461 - 48204424
Alignment:
Q  230 ttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  48204461 ttagatgagatggaacgagtctcttctagcttaaccaa 48204424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 50652565 - 50652521
Alignment:
Q  110 tgatatttgtacatctaaaaaatgacaattttgatgacaattttg 154  Q
    |||||||||||||| |||   ||||||||||||||||||||||||    
T  50652565 tgatatttgtacatttaattgatgacaattttgatgacaattttg 50652521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 27296 - 27213
Alignment:
Q  272 aaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 355  Q
    |||||||||||||||||| ||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 32421 - 32377
Alignment:
Q  223 agagcatttagatgagatggaacgggtctcttctaacttaaccaa 267  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||    
T  32421 agagcatttagataagatggaacgggtctcttctagcttcaccaa 32377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 29197 - 29130
Alignment:
Q  298 catttgggttccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 365  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacac 29130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 16107 - 16065
Alignment:
Q  291 tgccgtccatttgggttccacaatgctcgagggattagtctcc 333  Q
    ||||||||||||||||  |||||||||||| ||||||||||||    
T  16107 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 167834 - 167879
Alignment:
Q  218 acccaagagcatttagatgagatggaacgggtctcttctaacttaa 263  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||    
T  167834 acccaagagcgcttagatgagatgaaacgggtctcttctagcttaa 167879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University