View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17669_high_1 (Length: 297)
Name: NF17669_high_1
Description: NF17669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17669_high_1 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 31362247 - 31362535
Alignment:
| Q |
9 |
ttatactggcataatgatacgtatatttaatttaatggtagggtataagtataccagttaattttaataaattgtattaactgatctaactcattcacac |
108 |
Q |
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| T |
31362247 |
ttatacaggcataatgatacgtatatttaatttaatggtagggtataagtataccagttaattttaataaattgtattaactgatctaactcattcacac |
31362346 |
T |
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| Q |
109 |
atatacaacatcaataactaactctataagtttaatttctatatcaatgtaaataactaactcaactcaaattaattagaagtgctgatagaacttcgac |
208 |
Q |
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| T |
31362347 |
atatacaacatcaataactaactctataagtttaatttctatatcaatgtaaataactaactcaactcaaattaattagaagtgctgatagaacttcgac |
31362446 |
T |
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| Q |
209 |
ggaaaaagacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacgattttcggt |
297 |
Q |
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| T |
31362447 |
ggaaaaagacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgattttcggt |
31362535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 31416618 - 31416529
Alignment:
| Q |
201 |
acttcgacggaaaa-agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacga |
289 |
Q |
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| T |
31416618 |
acttcgacgaaaaagagacttacatttcaacaacatggcagaagttgtcaccagcaacagagcagttacaaattacattgttctctacga |
31416529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 31294879 - 31294954
Alignment:
| Q |
215 |
agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacgat |
290 |
Q |
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| T |
31294879 |
agacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgat |
31294954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 31388930 - 31388993
Alignment:
| Q |
215 |
agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacatt |
278 |
Q |
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| T |
31388930 |
agacttacattgaaacaacatggcagaagttgtcaccggcaacagagcagttgcaggtgacatt |
31388993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 31257692 - 31257766
Alignment:
| Q |
215 |
agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacga |
289 |
Q |
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| T |
31257692 |
agacttacattgaaacaacatggcagaagttgtcaccagcaacactgcagttgcaggtgacattgttcactacga |
31257766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 31309975 - 31310017
Alignment:
| Q |
207 |
acggaaaa-agacttacattgcaacaacatggcagaagttgtc |
248 |
Q |
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| T |
31309975 |
acggaaaatagacttacatttcaacaacatggcagaagttgtc |
31310017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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