View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17669_high_3 (Length: 264)
Name: NF17669_high_3
Description: NF17669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17669_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41702628 - 41702873
Alignment:
| Q |
1 |
agagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgag |
100 |
Q |
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| T |
41702628 |
agagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgag |
41702727 |
T |
|
| Q |
101 |
tttagaaaaagagaagaaatatgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaatagaaaaagtaatgaagcgttagaaa |
200 |
Q |
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| T |
41702728 |
tttagaaaaagagaagaaatatgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaatagaaaaagtaatgaagcgttagaaa |
41702827 |
T |
|
| Q |
201 |
agaagaacaatgaagttgatgtgttaagaagaaagattgttgaatt |
246 |
Q |
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| T |
41702828 |
agaagaacaatgaagttgatgtgttaagaagaaagattgttgaatt |
41702873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 41470066 - 41469881
Alignment:
| Q |
2 |
gagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagt |
101 |
Q |
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| T |
41470066 |
gagaatcaaaagttgcaacaaagctttgaaatggagagacttaagcttagagaggagtttcacttagagagactttcaagggtatatgctgagtctgagt |
41469967 |
T |
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| Q |
102 |
ttagaaaaagagaagaaat---------atgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaataga |
178 |
Q |
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| T |
41469966 |
ttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaagttaaggtaaataga |
41469881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 41509779 - 41509724
Alignment:
| Q |
27 |
ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaagg |
82 |
Q |
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|||| |||||||||||||||||| ||||| ||||||| ||||||| |||| ||||| |
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| T |
41509779 |
ttgatatggagagactaaagcttcaagaggagcttgaaatggagaaacttgcaagg |
41509724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 41520005 - 41519950
Alignment:
| Q |
27 |
ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaagg |
82 |
Q |
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| T |
41520005 |
ttgaaatggagagactaaagcttcaagaggagcttaaaatggagaaacttgcaagg |
41519950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 41524585 - 41524534
Alignment:
| Q |
127 |
gaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaataga |
178 |
Q |
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| T |
41524585 |
gaaagttcaagaaagttatgaagctcttttgaaagaagttaaggtgaataga |
41524534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 41499699 - 41499661
Alignment:
| Q |
208 |
caatgaagttgatgtgttaagaagaaagattgttgaatt |
246 |
Q |
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| T |
41499699 |
caatgaagttggtgtgttaagaacaaagattgttgaatt |
41499661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 16638302 - 16638434
Alignment:
| Q |
27 |
ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc |
126 |
Q |
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|||||||| ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| ||||||||| ||||||| |||||||| ||| ||| | |
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| T |
16638302 |
ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc |
16638401 |
T |
|
| Q |
127 |
gaaagtgcaagaaaattatgaagctctcttgaa |
159 |
Q |
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||||| || ||| |||||||||||||||||| |
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| T |
16638402 |
gaaagatcaggaatgttatgaagctctcttgaa |
16638434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 17457336 - 17457204
Alignment:
| Q |
27 |
ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc |
126 |
Q |
| |
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|||||||| ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| ||||||||| ||||||| |||||||| ||| ||| | |
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| T |
17457336 |
ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc |
17457237 |
T |
|
| Q |
127 |
gaaagtgcaagaaaattatgaagctctcttgaa |
159 |
Q |
| |
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||||| || ||| |||||||||||||||||| |
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| T |
17457236 |
gaaagatcaggaatgttatgaagctctcttgaa |
17457204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 17595878 - 17596010
Alignment:
| Q |
27 |
ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc |
126 |
Q |
| |
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|||||||| ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| ||||||||| ||||||| |||||||| ||| ||| | |
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| T |
17595878 |
ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc |
17595977 |
T |
|
| Q |
127 |
gaaagtgcaagaaaattatgaagctctcttgaa |
159 |
Q |
| |
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||||| || ||| |||||||||||||||||| |
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| T |
17595978 |
gaaagatcaggaatgttatgaagctctcttgaa |
17596010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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