View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17669_high_4 (Length: 250)
Name: NF17669_high_4
Description: NF17669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17669_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 2794188 - 2793941
Alignment:
| Q |
3 |
ccaccaccatatcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaa |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2794188 |
ccaccaccacatcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaa |
2794089 |
T |
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| Q |
103 |
ctccagaaaatcagttataacctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtca |
202 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794088 |
ctccagaaaatcagttataagctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtca |
2793989 |
T |
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| Q |
203 |
ccaatagagtcgtttttcagaatggaaagaatctcatcagcagcacct |
250 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793988 |
ccaacagagtcgtttttcagaatggaaagaatctcatcagcagcacct |
2793941 |
T |
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