View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17669_low_1 (Length: 297)

Name: NF17669_low_1
Description: NF17669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17669_low_1
NF17669_low_1
[»] chr2 (6 HSPs)
chr2 (9-297)||(31362247-31362535)
chr2 (201-289)||(31416529-31416618)
chr2 (215-290)||(31294879-31294954)
chr2 (215-278)||(31388930-31388993)
chr2 (215-289)||(31257692-31257766)
chr2 (207-248)||(31309975-31310017)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 31362247 - 31362535
Alignment:
Q  9 ttatactggcataatgatacgtatatttaatttaatggtagggtataagtataccagttaattttaataaattgtattaactgatctaactcattcacac 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31362247 ttatacaggcataatgatacgtatatttaatttaatggtagggtataagtataccagttaattttaataaattgtattaactgatctaactcattcacac 31362346  T
Q  109 atatacaacatcaataactaactctataagtttaatttctatatcaatgtaaataactaactcaactcaaattaattagaagtgctgatagaacttcgac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31362347 atatacaacatcaataactaactctataagtttaatttctatatcaatgtaaataactaactcaactcaaattaattagaagtgctgatagaacttcgac 31362446  T
Q  209 ggaaaaagacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacgattttcggt 297  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31362447 ggaaaaagacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgattttcggt 31362535  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 31416618 - 31416529
Alignment:
Q  201 acttcgacggaaaa-agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacga 289  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||||| |||| || |||||||| |||  | ||||| ||||||||||    
T  31416618 acttcgacgaaaaagagacttacatttcaacaacatggcagaagttgtcaccagcaacagagcagttacaaattacattgttctctacga 31416529  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 31294879 - 31294954
Alignment:
Q  215 agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacgat 290  Q
    ||||||||||| ||||||||||||||||||||||  ||| ||||  |||||  || |||||||| |||||||||||    
T  31294879 agacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgat 31294954  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 31388930 - 31388993
Alignment:
Q  215 agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacatt 278  Q
    |||||||||||| ||||||||||||||||||||| || | || ||||||||  |||||||||||    
T  31388930 agacttacattgaaacaacatggcagaagttgtcaccggcaacagagcagttgcaggtgacatt 31388993  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 31257692 - 31257766
Alignment:
Q  215 agacttacattgcaacaacatggcagaagttgtctccaggaatagagcagtcacaggtgacattattctctacga 289  Q
    |||||||||||| ||||||||||||||||||||| |||| || |  |||||  ||||||||||| ||| ||||||    
T  31257692 agacttacattgaaacaacatggcagaagttgtcaccagcaacactgcagttgcaggtgacattgttcactacga 31257766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 31309975 - 31310017
Alignment:
Q  207 acggaaaa-agacttacattgcaacaacatggcagaagttgtc 248  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  31309975 acggaaaatagacttacatttcaacaacatggcagaagttgtc 31310017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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