View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17669_low_2 (Length: 288)
Name: NF17669_low_2
Description: NF17669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17669_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 24496587 - 24496853
Alignment:
| Q |
1 |
tgccagaatattgacatagggatagtcttggcatcatagtagttattctttcggatcatgtcgaggcgaacgacttctagaatgccggcgatgatcatgg |
100 |
Q |
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| T |
24496587 |
tgccagaatattgacatagggatagtcttggcatcatagtagttattctttcggatcatatcgagacgaacgacttctagaatgccggcgatgatcatgg |
24496686 |
T |
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| Q |
101 |
aaaagattgagaggactaggcctatgcccattgttagcaacagtttgaatccgtgttcgtggccggtgaactttctttcgtaagggagtaggacgcgatc |
200 |
Q |
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| T |
24496687 |
aaaagattgagaggacaaggcctattcccattctttggagctgtgtgaatccgtgttcgtggccggtgaactttcttgcgtaagggactatgatgcggtc |
24496786 |
T |
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| Q |
201 |
gtaatcctgtgcccagaaggtgacgcgtagagtgtcgaaaagtgagtgggaagctgatggggtttgg |
267 |
Q |
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| T |
24496787 |
gtataccggtgcccagaagatgacgcttagagtgtcgaaaagtgagagggaagctgatgggatttgg |
24496853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4367040 - 4367299
Alignment:
| Q |
1 |
tgccagaatattgacatagggatagtcttggcatcatagtagttattctttcggatcatgtcgaggcgaacgacttctagaatgccggcgatgatcatgg |
100 |
Q |
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|||||||| || ||||||||||| || | | ||||||||||| || || |||| ||||||||||| | |||||||||||| || || | |||||||| |
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| T |
4367040 |
tgccagaagatcgacatagggatggtttcgaggtcatagtagttgtttttgcggacaatgtcgaggcgtatgacttctagaatccctgccacgatcatgg |
4367139 |
T |
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| Q |
101 |
aaaagattgagaggactaggcctatgcccattgttagcaacagtttgaatccgtgttcgtggccggtgaactttctttcgtaagggagtaggacgcgatc |
200 |
Q |
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| T |
4367140 |
aaatgattgagatgactaggccgattccgattctttgaagctgtgtgaaaccgtgttcattaccagtgtactttcttgcgaaagggacgatgagacggtc |
4367239 |
T |
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| Q |
201 |
gtaatcctgtgcccagaaggtgacgcgtagagtgtcgaaaagtgagtgggaagctgatgg |
260 |
Q |
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||| || | ||||||||| |||| | ||||||||||||||| ||| |||| |||||||| |
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| T |
4367240 |
gtagaccggggcccagaagatgacacttagagtgtcgaaaagggagagggatgctgatgg |
4367299 |
T |
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