View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1766_high_2 (Length: 321)
Name: NF1766_high_2
Description: NF1766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1766_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 34578633 - 34578927
Alignment:
| Q |
16 |
tttaatacatacgaaacatgtaagtattgggttttacaaaacattaagtttgtagacacaaatttgcatttgaaagccatatattaaatacctttcgcga |
115 |
Q |
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| T |
34578633 |
tttaatacatacgaaacatgtaagtattgggttttacaaaacattaagtttgtagacacaaatttgcatttgaaagccatatattaaatacctttcgcga |
34578732 |
T |
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| Q |
116 |
acgtttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatattggttaacaacctaggattatatata |
215 |
Q |
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| T |
34578733 |
acgcttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatactggttaacaacctagga-tatatata |
34578831 |
T |
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| Q |
216 |
tggtataatgttgatagatatacaaattgacttttgagtaatgtatgcatattttatctacccaagaagcaaatgttttggcatcttgtatttcat |
311 |
Q |
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| T |
34578832 |
tggtataatgttgatagatatacaaatttacttttgagtaatgtatgcatattttatatacccaagaagcaaatgttttggcatcttgtatttcat |
34578927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 311
Target Start/End: Original strand, 35124405 - 35124615
Alignment:
| Q |
98 |
attaaatacctttcgcgaacgtttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatattggttaac |
197 |
Q |
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| T |
35124405 |
attaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaattttaaattagtgttggttaac |
35124504 |
T |
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| Q |
198 |
aacctaggattatatatatggtataatgttgatagatatacaaattgacttttgagtaatgtatgcatattttatctacccaagaagcaaatgttttggc |
297 |
Q |
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| T |
35124505 |
aacttataattatgcata--atataattttggtagaaatgaaaattggc-tttcaataatgaatgtatatatgatatacccaagaagcaaatgttttggc |
35124601 |
T |
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| Q |
298 |
atcttgtatttcat |
311 |
Q |
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| T |
35124602 |
atcttgtatttcat |
35124615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 34594456 - 34594510
Alignment:
| Q |
131 |
ttttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatca |
185 |
Q |
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| T |
34594456 |
ttttcacaattatcatacttcaaatagtcaattccctaaagaaaaatttaaatca |
34594510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 311
Target Start/End: Original strand, 32590847 - 32591113
Alignment:
| Q |
47 |
ttttacaaaacattaagtttgtagacacaa--atttgcatttgaaagccatatattaaatacctttcgcgaacgtttattccgttattttcacaattatc |
144 |
Q |
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| T |
32590847 |
ttttacaaaatattaagtatgtagatatacctatttgcatttgaagaacataaattaaatacctttctctaacgcttataccattattgtgacaattatc |
32590946 |
T |
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| Q |
145 |
atacttcaaatagtcaactccctaaacaaaaatttaaatcaatattggttaacaacctaggattatatatatggtataatgttgatagatatacaaattg |
244 |
Q |
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| T |
32590947 |
atacttcaaatagtcgactccctaaagaaaattttaaatcagtattggttaacaacataagattataaacaagatataatgttgataaaagtgaaaaatg |
32591046 |
T |
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| Q |
245 |
acttttgagtaatgtatgcatattttatctacccaagaagcaaatgttttggcatcttgtatttcat |
311 |
Q |
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| T |
32591047 |
actttcaaataatgtatgtatatgtgatatacccaagaagcaaatgttttggcatcttgtatttcat |
32591113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 311
Target Start/End: Original strand, 32601369 - 32601582
Alignment:
| Q |
98 |
attaaatacctttcgcgaacgtttattccgttattttcacaattatcatacttcaaatagtcaactccctaaacaaaaatttaaatcaatattggttaac |
197 |
Q |
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| T |
32601369 |
attaaatacctttctctaacgcttataccattattttcacaattatcatacttcaaatagtcgactccctaaagaaaaatttgaaccaatattggttaac |
32601468 |
T |
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| Q |
198 |
aacctaggattatatatatggtataatgttgatagatatacaaattgacttttgagtaatgtatgcatattttatctacccaagaagcaaatgttttggc |
297 |
Q |
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| T |
32601469 |
aacataaggttagaaatagaatataatgttgataaaattgaaaaatgattttcaaataatgtatgtatatatggtttacccaagaagcaaatgttttggc |
32601568 |
T |
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| Q |
298 |
atcttgtatttcat |
311 |
Q |
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|||||||||||||| |
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| T |
32601569 |
atcttgtatttcat |
32601582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 24883166 - 24883124
Alignment:
| Q |
128 |
ttattttcacaattatcatacttcaaatagtcaactccctaaa |
170 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
24883166 |
ttattctcacaattatcatacttcaagtagtcaattccctaaa |
24883124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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