View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1766_high_5 (Length: 236)
Name: NF1766_high_5
Description: NF1766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1766_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47889434 - 47889213
Alignment:
| Q |
1 |
tatttgtataactgtcaaaaacataacgataatgtggtaacatttacgagttacgtaagagttttgcaaaccacataatcatatgatactagtggcattg |
100 |
Q |
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| T |
47889434 |
tatttgtataactgtcaaaaacataacgataatgtggtaacatttacgagttacgtaagagttttgcaaaccgcataatcatatgatactagtggcattg |
47889335 |
T |
|
| Q |
101 |
gttctgtatttgggtggttttaatttgatttcgtgtgtactaagaaaatttgaatttatagtaatcttgccaatttaccaaatgcatccgaaattaatac |
200 |
Q |
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| T |
47889334 |
gttctgcatttgggtggttttaatttgatttcgtgtgtactaagaaaatttgaatttatagtaatcttgccaatttaccaaatgcatccgaaattaatac |
47889235 |
T |
|
| Q |
201 |
acctaactcttgtgaaacttgt |
222 |
Q |
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|||||||||| ||||||||||| |
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| T |
47889234 |
acctaactctagtgaaacttgt |
47889213 |
T |
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