View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1766_low_1 (Length: 404)
Name: NF1766_low_1
Description: NF1766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1766_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 4373394 - 4373016
Alignment:
| Q |
14 |
gaaactaggtggtactatagtataatgcaagctcgcactccactccatcggctctcaagactgacaatattctagaattccagatcattgtcatgtattt |
113 |
Q |
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| T |
4373394 |
gaaactaggtggtactatagtataatgcaagcccacactccactccatcggctctcaagactgacaatattctagaattccagatcattgtcatgtattt |
4373295 |
T |
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| Q |
114 |
gaaatcccatgtcttacccatatttttctctgatgtgatccacaatcccataaagtatcgtaaattcatccatctcctccgatgtttcgtcattcctctc |
213 |
Q |
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| T |
4373294 |
gaaatcccatgtcttacccatatctttctctgatgtgatccacaatcccataaagtatggtaaattcgtccatctcctccgatgtttcatcattcctctc |
4373195 |
T |
|
| Q |
214 |
acttttgtaatatggtcgtaaagcgataaaggccctccaattagatccaatagccttgtaaacaagttccatctcctttacagtgtaacaggtgatgatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4373194 |
acttttgtaatatggtcgtaaagcgataaaggccctccaattagatccaatagccttgtaaacaagttccatctcctttacagtgtaacaggtgatgatc |
4373095 |
T |
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| Q |
314 |
ggttgtgggaggtgatcatt----tcttggatgttcaattttatcaagtccgcccaactttgagttttttcgcgattact |
389 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
4373094 |
ggttgtgggaggtgatcatttctttcttggatgttcaattttatcaagtcggcccaactttgag-ttgttcgcgattact |
4373016 |
T |
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