View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1766_low_4 (Length: 289)
Name: NF1766_low_4
Description: NF1766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1766_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 31949627 - 31949916
Alignment:
| Q |
1 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtggattttctggggagcggccacctctgtg--caacgcccgtaagttgatggcag |
98 |
Q |
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| T |
31949627 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagtggccacctctgtgtgcaacgcccgtaagttgatggcag |
31949726 |
T |
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| Q |
99 |
gaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatc |
198 |
Q |
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| T |
31949727 |
gaataaagatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatc |
31949826 |
T |
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| Q |
199 |
tataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcactgttgattatgtggggtcctttgctt |
288 |
Q |
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| T |
31949827 |
tataggcattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcagtgttgattatgtggggtcctttgctt |
31949916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 29707581 - 29707501
Alignment:
| Q |
155 |
tgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgattt |
235 |
Q |
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| T |
29707581 |
tgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaattt |
29707501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 27510214 - 27510027
Alignment:
| Q |
72 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
171 |
Q |
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| T |
27510214 |
tgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgtt |
27510115 |
T |
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| Q |
172 |
ggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
259 |
Q |
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| T |
27510114 |
ggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
27510027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 27271184 - 27271379
Alignment:
| Q |
72 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaat--------aaggttgtgtatctatgtgcacct |
163 |
Q |
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| T |
27271184 |
tgtgcaacgcgcgtaagttgattgaaggagcaaatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcct |
27271283 |
T |
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| Q |
164 |
ccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
259 |
Q |
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| T |
27271284 |
ccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaattag |
27271379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 39210719 - 39210906
Alignment:
| Q |
72 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
171 |
Q |
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| T |
39210719 |
tgtgcagcgcgcataagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgtt |
39210818 |
T |
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| Q |
172 |
ggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
259 |
Q |
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| T |
39210819 |
ggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
39210906 |
T |
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