View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17670_high_18 (Length: 238)
Name: NF17670_high_18
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_high_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 31506339 - 31506119
Alignment:
| Q |
18 |
gaagcatgattccatattttgaatcctccaatgaagtggcccaataacaagttgataaagagagtgagtgttagcatgtgagaaggactaatatcgatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506339 |
gaagcatgattccatattttgaatcctccaatgaagtggcccaataacaagttgataaagagagtgagtgttagcatgtgagaaggactaatatcgatga |
31506240 |
T |
|
| Q |
118 |
taaagggcactgtatttggccacaccaattgatacgagtcccaagcaaaataaaattgagattttggtacaaaaagaaccgttaaacatcattttctttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506239 |
taaagggcactgtatttggccacaccaattgaaacgagtcccaagcaaaataaaattgagattttggtacaaaaagaaccgttaaacatcattttctttt |
31506140 |
T |
|
| Q |
218 |
cctttcccatgtccctttcac |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31506139 |
cctttcccatgtccctttcac |
31506119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University