View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_high_3 (Length: 430)
Name: NF17670_high_3
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 21196832 - 21197232
Alignment:
| Q |
12 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccgttgctcttggatccctccagctga |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21196832 |
atgaagagtatatatcgaaaaagaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccattgctcttggatccctccagctga |
21196931 |
T |
|
| Q |
112 |
taagagactgcaccctctctccttgagttgccaaatcacccatcacagcaagcactctacctgaaatgcctctcaatctatcataccttttttgcagatt |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21196932 |
taagagaatgcaccctctctccttgagttgccaaatcacccatcacaacaagcactctccctgaaatgcctctcaatctatcataccttttatgcagatt |
21197031 |
T |
|
| Q |
212 |
accaccactaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197032 |
accaccgctaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
21197131 |
T |
|
| Q |
312 |
tatcttggccttattcggtattgccaaatcccattaaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
411 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197132 |
tatcttggccttattcggtattgccaaatcccattgaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
21197231 |
T |
|
| Q |
412 |
t |
412 |
Q |
| |
|
| |
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|
| T |
21197232 |
t |
21197232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 27252676 - 27253074
Alignment:
| Q |
12 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccgttgctcttggatccctccagctga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27252676 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagcctttgctcttggatccctccagctga |
27252775 |
T |
|
| Q |
112 |
taagagactgcaccctctctccttgagttgccaaatcacccatcacagcaagcactctacctgaaatgcctctcaatctatcataccttttttgcagatt |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
27252776 |
taagagattgcaccctctctccttgagttgccaaatcacccatcacaacaagcactctccctgaaatgcctctcaatctatcataccttttctgcagatt |
27252875 |
T |
|
| Q |
212 |
accaccactaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27252876 |
accaccgctaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatcc--atgagaagga |
27252973 |
T |
|
| Q |
312 |
tatcttggccttattcggtattgccaaatcccattaaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
411 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27252974 |
tatcttggccttattcggtattgccaaatcccattgaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
27253073 |
T |
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