View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_high_6 (Length: 345)
Name: NF17670_high_6
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 6232828 - 6232505
Alignment:
| Q |
13 |
gagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatg |
112 |
Q |
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| T |
6232828 |
gagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtgtatgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatg |
6232729 |
T |
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| Q |
113 |
attaccggagaacccgc---atggaatgagtcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattat |
209 |
Q |
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| T |
6232728 |
attaccggagaacccgccgcatggaatgaatcagatatgttgatgttgacgattcgaattggtgttggagaagaattgccaaaaattccagaggaattat |
6232629 |
T |
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| Q |
210 |
cacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgt |
309 |
Q |
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| T |
6232628 |
cacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgt |
6232529 |
T |
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| Q |
310 |
tgaaactgtttcagttgtaaatga |
333 |
Q |
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| T |
6232528 |
tgaaactgtttcagttgtaaatga |
6232505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 6222034 - 6221734
Alignment:
| Q |
31 |
tatgtcaccagaagcagtgaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgca |
130 |
Q |
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| T |
6222034 |
tatgtcaccagaagcggtgaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatggctacgggtaaacatgca |
6221935 |
T |
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| Q |
131 |
tggaatg-----ag----tcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaa |
221 |
Q |
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| T |
6221934 |
tggaatgtaagcagcggttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaa |
6221835 |
T |
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| Q |
222 |
aagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttc |
321 |
Q |
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| T |
6221834 |
aagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttc |
6221735 |
T |
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| Q |
322 |
a |
322 |
Q |
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| T |
6221734 |
a |
6221734 |
T |
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