View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17670_high_7 (Length: 344)

Name: NF17670_high_7

Description: NF17670

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17670_high_7

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 170; E-Value: 3e-91

Query Start/End: Original strand, 153 - 326

Target Start/End: Complemental strand, 27880849 - 27880676

Alignment:

Q	153	agtggtgagttgggtgttggtgaagaggttgaatttgaggaagtgtgcgtgtatggtacgcgcgttgaggagagtggtggttggagagttgagacattgg	252	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27880849	agtggtgagttgggtgttggtgaagaggttgaatttgaggaagtgtgcgtgtatggtacgcgcgttgaggagagtggtagttggagagttgagacattgg	27880750	T

Q	253	gatacaatggattggaacattggaatgagacagtttttgattttgttttgaacaatgatgaatgttagcgttgt	326	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27880749	gatacaatggattggaacattggaatgagacagtttttgattttgttttgaacaatgatgaatgttagcgttgt	27880676	T

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Target: chr6; HSP #2

Raw Score: 39; E-Value: 0.0000000000005

Query Start/End: Original strand, 12 - 54

Target Start/End: Complemental strand, 27880990 - 27880948

Alignment:

Q	12	aagaatatgacgaaagtggtgggacctagcaaaggagtggatt	54	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27880990	aagaacatgacgaaagtggtgggacctagcaaaggagtggatt	27880948	T

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