View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_1 (Length: 509)
Name: NF17670_low_1
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 249 - 486
Target Start/End: Original strand, 8943968 - 8944205
Alignment:
| Q |
249 |
tgttaacaaacactgaggtggtgtggcatcctttgctgttacacagatacggtaacagaagcgtgtacaaattggttctctaattcaagtgttagaagga |
348 |
Q |
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| T |
8943968 |
tgttaacaaacactgaggtggtgtggcatcctttgctgttacacagatacggtaacagaagcgtgcacaaattggttctctaattcaagtgttagaagga |
8944067 |
T |
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| Q |
349 |
tcggcaatggagaaacaaccttgttttagtctcataaatgggctggaagtttaatattgcatgagaagttcccaaggcttatttttattgcaagaaacag |
448 |
Q |
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| T |
8944068 |
tcggcaatggagaaacaaccttgttttagtctcataaatgggctggaagtttaatattgcatgagaagttcccaaggcttatttctattgcaagaaacag |
8944167 |
T |
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| Q |
449 |
gtacgaaactgtatcggaagtaagagtgtgcgcggatg |
486 |
Q |
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| T |
8944168 |
gtccgaaactgtatcggaagtaggagtgcgcgcagatg |
8944205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 8943576 - 8943779
Alignment:
| Q |
12 |
atgaaactacaagatcctttatgaaactatttgcaatcattaatgtgtaaaagagtatgttcatgcatattgcataccacaattgatactaaaagcccta |
111 |
Q |
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| T |
8943576 |
atgaaactacaagatcctttatgaaactatttgtaatcattaatgtgtaaaagagtatgttcatgcatattgcataccacaattgatactaacagcccta |
8943675 |
T |
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| Q |
112 |
ccccacataatccatattccatgtttagctctctgcttggttttgttttgtattggtgttggagtaggttttgtattttaagaactctaataatacaaca |
211 |
Q |
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| T |
8943676 |
ccccacataatccatattacatgtttagctctctgcttggttttattttgtattggtgtcggagtaggttttgtattttaagaactctaataatacaaca |
8943775 |
T |
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| Q |
212 |
aagt |
215 |
Q |
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| T |
8943776 |
aagt |
8943779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 315 - 470
Target Start/End: Original strand, 43475546 - 43475701
Alignment:
| Q |
315 |
acaaattggttctctaattcaagtgttagaaggatcggcaatggag-aaacaaccttgttttagtctcataaatgggctggaagtttaatattgcatgag |
413 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||| | ||||||||||| ||| |||||| | || ||||||||||| |||||||| ||| |
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| T |
43475546 |
acaaattggttctctaattcaatttttagaaggatcggtaatggtgaaaacaaccttgctttggtctcaaagat-ggctggaagttccatattgcaagag |
43475644 |
T |
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| Q |
414 |
aagttcccaaggcttatttttattgcaagaaacaggtacgaaactgtatcggaagta |
470 |
Q |
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| T |
43475645 |
acgttcctaagacatttttctgttgcaagaaacagatctggaactgtgtcggaagta |
43475701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 43564754 - 43564695
Alignment:
| Q |
316 |
caaattggttctctaattcaagtgttagaaggatcggcaatggagaaacaaccttgtttt |
375 |
Q |
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| T |
43564754 |
caaatcggttctctaattcaattgttagtaggatcggaaatggttgaacaaccttgtttt |
43564695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 16116698 - 16116646
Alignment:
| Q |
338 |
tgttagaaggatcggcaatggagaaacaaccttgttttagtctcataaatggg |
390 |
Q |
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| T |
16116698 |
tgttagatggattggcaatggtgaaacaaccttgttttggtctaatagatggg |
16116646 |
T |
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