View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_17 (Length: 253)
Name: NF17670_low_17
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 44727152 - 44727045
Alignment:
| Q |
1 |
cctttgaaggagtaaattgcataaaagcaattatcccacaacaaagcaaaaagatctacaaattccaccgccaccaaggaaggtgataacaaaatattgc |
100 |
Q |
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| T |
44727152 |
cctttgaaggagtaaattgcataaaagcaattatcccacagcaaagcaaaaagatctacaaattccaccgccaccaaggaaggtgataacaaaatattgc |
44727053 |
T |
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| Q |
101 |
taaggtag |
108 |
Q |
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|||||||| |
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| T |
44727052 |
taaggtag |
44727045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 44726758 - 44726629
Alignment:
| Q |
110 |
aataaactgcacattagcagaaaatatacctttgaatatatat---tttttaatttatcacttaaacaatgttatttacgatcaagaatttgaattacat |
206 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
44726758 |
aataaactgcacattaacagaaaatatacctttcaatatatatatatttttaatttatcacttaaacaatgttatttacaataaagaatttgaattacat |
44726659 |
T |
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| Q |
207 |
tctaaaattacattattcgcacatttgagg |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44726658 |
tctaaaattacattattcgcacatttgagg |
44726629 |
T |
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