View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_19 (Length: 242)
Name: NF17670_low_19
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 33376933 - 33377144
Alignment:
| Q |
12 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
111 |
Q |
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| T |
33376933 |
aagcaaaggtgtttcgaaaaaaggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagt |
33377032 |
T |
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| Q |
112 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
211 |
Q |
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| T |
33377033 |
ggaagcttagagagtttgagttctgaaaaggatgatgatgatcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtt |
33377132 |
T |
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| Q |
212 |
tggattctaaag |
223 |
Q |
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|||||||||||| |
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| T |
33377133 |
tggattctaaag |
33377144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 33383101 - 33383294
Alignment:
| Q |
33 |
aggtgattctctcaatcttgatgttgtttttaaacttaacaatgtcttcaattcaatcaatataactagtttggttagtggaagcttagagagtttgagt |
132 |
Q |
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|||||||||||| |||||||||| ||| ||||| ||||||||||| ||| |||||| || || ||||||||| | |||||||||||||||||||||||| |
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| T |
33383101 |
aggtgattctcttaatcttgatgctgtctttaagcttaacaatgttttccattcaagtaacatcactagtttgatcagtggaagcttagagagtttgagt |
33383200 |
T |
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| Q |
133 |
tctgaaaaggatgatgat---gttcattactttgaaccaatttctttaatgatgtttccaaaagcaaattatagttatagtttggattctaaag |
223 |
Q |
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|||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383201 |
tctgaaaagggtgatgagaaagatcattactttgaaccaatttctataatgatgtttccaaaagcaaattatagttatagtttggattctaaag |
33383294 |
T |
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