View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17670_low_2 (Length: 466)

Name: NF17670_low_2
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17670_low_2
NF17670_low_2
[»] chr3 (19 HSPs)
chr3 (22-260)||(45168288-45168530)
chr3 (339-456)||(45168609-45168727)
chr3 (130-255)||(39913337-39913461)
chr3 (81-164)||(2472720-2472800)
chr3 (140-251)||(41218665-41218774)
chr3 (140-206)||(5128814-5128879)
chr3 (140-256)||(53012882-53012996)
chr3 (140-255)||(3068994-3069107)
chr3 (140-256)||(43304079-43304191)
chr3 (140-249)||(43306791-43306898)
chr3 (157-256)||(3063872-3063970)
chr3 (157-250)||(25857653-25857746)
chr3 (156-250)||(19795115-19795208)
chr3 (81-131)||(5128916-5128966)
chr3 (81-131)||(43303992-43304042)
chr3 (55-131)||(43306677-43306754)
chr3 (157-254)||(19949861-19949957)
chr3 (199-254)||(19999262-19999317)
chr3 (143-185)||(40593564-40593605)
[»] chr8 (28 HSPs)
chr8 (140-256)||(22921969-22922084)
chr8 (136-254)||(6845195-6845311)
chr8 (162-256)||(42890253-42890347)
chr8 (144-256)||(22926771-22926880)
chr8 (140-236)||(42891783-42891878)
chr8 (140-250)||(22512165-22512275)
chr8 (55-178)||(18468611-18468732)
chr8 (136-253)||(37189725-37189841)
chr8 (140-250)||(18180802-18180910)
chr8 (156-250)||(23573445-23573538)
chr8 (83-164)||(20693776-20693855)
chr8 (140-190)||(22520918-22520967)
chr8 (68-131)||(23570591-23570654)
chr8 (81-131)||(2189753-2189803)
chr8 (81-164)||(2687719-2687800)
chr8 (81-131)||(22926680-22926730)
chr8 (140-250)||(23570449-23570554)
chr8 (81-164)||(24731204-24731285)
chr8 (81-131)||(42890399-42890449)
chr8 (81-131)||(42891696-42891746)
chr8 (59-131)||(16598256-16598329)
chr8 (55-131)||(22921855-22921932)
chr8 (100-162)||(2609546-2609605)
chr8 (68-131)||(22512065-22512128)
chr8 (68-131)||(22519365-22519428)
chr8 (55-131)||(6845343-6845420)
chr8 (102-164)||(14130142-14130201)
chr8 (140-199)||(26150601-26150660)
[»] chr1 (20 HSPs)
chr1 (140-256)||(50857563-50857678)
chr1 (136-256)||(8931080-8931195)
chr1 (82-173)||(31915518-31915606)
chr1 (75-164)||(10927171-10927256)
chr1 (55-131)||(8931227-8931304)
chr1 (140-250)||(13441718-13441826)
chr1 (81-164)||(12944093-12944174)
chr1 (75-158)||(28660771-28660852)
chr1 (85-164)||(23987549-23987630)
chr1 (81-159)||(31913359-31913434)
chr1 (80-164)||(8221465-8221547)
chr1 (81-160)||(26981490-26981568)
chr1 (143-189)||(12486347-12486392)
chr1 (81-164)||(50713690-50713771)
chr1 (82-131)||(13444021-13444070)
chr1 (140-238)||(13444107-13444203)
chr1 (157-190)||(42071456-42071489)
chr1 (81-131)||(43681468-43681520)
chr1 (55-131)||(50857449-50857526)
chr1 (83-127)||(9194976-9195020)
[»] scaffold0110 (2 HSPs)
scaffold0110 (81-250)||(46765-46932)
scaffold0110 (136-250)||(45376-45490)
[»] chr6 (22 HSPs)
chr6 (136-256)||(3535891-3536009)
chr6 (136-256)||(3542102-3542220)
chr6 (135-250)||(30052064-30052179)
chr6 (135-250)||(30049777-30049892)
chr6 (140-254)||(11190357-11190469)
chr6 (129-256)||(29340914-29341040)
chr6 (75-134)||(18727112-18727171)
chr6 (157-218)||(26571045-26571104)
chr6 (81-131)||(29340838-29340888)
chr6 (55-131)||(3536041-3536118)
chr6 (55-131)||(30049923-30050000)
chr6 (179-250)||(2939848-2939918)
chr6 (81-131)||(30052210-30052260)
chr6 (55-131)||(3542252-3542329)
chr6 (84-162)||(33615538-33615614)
chr6 (85-190)||(12882075-12882177)
chr6 (81-164)||(1127231-1127312)
chr6 (101-173)||(27822170-27822239)
chr6 (82-131)||(11658939-11658988)
chr6 (156-250)||(19232188-19232279)
chr6 (140-223)||(2339167-2339248)
chr6 (157-250)||(3565600-3565691)
[»] chr5 (8 HSPs)
chr5 (144-256)||(40778909-40779020)
chr5 (157-256)||(21849106-21849204)
chr5 (101-218)||(19497356-19497467)
chr5 (143-246)||(19677252-19677353)
chr5 (55-131)||(21848970-21849047)
chr5 (60-164)||(26140320-26140422)
chr5 (81-131)||(40778818-40778868)
chr5 (83-131)||(18252423-18252472)
[»] chr2 (28 HSPs)
chr2 (140-256)||(33655482-33655598)
chr2 (140-236)||(27952437-27952532)
chr2 (140-236)||(27956273-27956368)
chr2 (136-256)||(31633960-31634079)
chr2 (83-256)||(2165779-2165949)
chr2 (157-256)||(2155823-2155921)
chr2 (136-250)||(31636197-31636312)
chr2 (157-255)||(22264292-22264389)
chr2 (81-164)||(23457623-23457704)
chr2 (81-256)||(15129274-15129447)
chr2 (140-256)||(22011288-22011406)
chr2 (136-219)||(8781407-8781488)
chr2 (81-164)||(21772352-21772432)
chr2 (55-131)||(27952323-27952400)
chr2 (55-131)||(31634111-31634188)
chr2 (81-164)||(33051595-33051676)
chr2 (81-131)||(33655635-33655685)
chr2 (81-131)||(36647300-36647350)
chr2 (55-131)||(2155974-2156051)
chr2 (55-131)||(22011443-22011520)
chr2 (55-131)||(31636344-31636421)
chr2 (83-173)||(12966445-12966532)
chr2 (75-131)||(28737913-28737969)
chr2 (83-164)||(32162002-32162081)
chr2 (55-131)||(27956159-27956236)
chr2 (104-190)||(4184881-4184963)
chr2 (175-250)||(18725747-18725820)
chr2 (76-131)||(23456582-23456638)
[»] chr7 (31 HSPs)
chr7 (157-256)||(4303305-4303404)
chr7 (140-256)||(13882805-13882918)
chr7 (157-256)||(4300412-4300511)
chr7 (157-256)||(13886323-13886420)
chr7 (81-164)||(24840120-24840201)
chr7 (129-256)||(859264-859389)
chr7 (129-256)||(1217268-1217393)
chr7 (89-164)||(3778748-3778820)
chr7 (157-250)||(5678346-5678438)
chr7 (157-250)||(5703398-5703490)
chr7 (203-256)||(1220613-1220666)
chr7 (83-164)||(1369782-1369861)
chr7 (83-164)||(27142643-27142722)
chr7 (68-131)||(1220459-1220522)
chr7 (85-162)||(4888721-4888795)
chr7 (75-162)||(11228960-11229045)
chr7 (55-131)||(13882691-13882768)
chr7 (55-131)||(13886164-13886241)
chr7 (81-161)||(11000857-11000935)
chr7 (81-131)||(27309646-27309697)
chr7 (81-131)||(859188-859238)
chr7 (81-131)||(1217192-1217242)
chr7 (82-131)||(1883496-1883546)
chr7 (80-131)||(1753628-1753680)
chr7 (81-190)||(1365624-1365729)
chr7 (81-131)||(5934611-5934662)
chr7 (82-131)||(1874545-1874595)
chr7 (81-131)||(30217822-30217871)
chr7 (75-161)||(1786663-1786747)
chr7 (75-131)||(4133299-4133356)
chr7 (83-164)||(8916410-8916489)
[»] chr4 (14 HSPs)
chr4 (140-249)||(6659449-6659556)
chr4 (117-258)||(24667541-24667678)
chr4 (143-218)||(13085214-13085286)
chr4 (140-245)||(22691178-22691281)
chr4 (81-190)||(40206101-40206206)
chr4 (157-199)||(13086270-13086312)
chr4 (83-164)||(38888023-38888102)
chr4 (157-253)||(4053007-4053101)
chr4 (84-164)||(10494880-10494958)
chr4 (170-254)||(2053156-2053238)
chr4 (81-131)||(6659362-6659412)
chr4 (100-164)||(9260550-9260611)
chr4 (81-164)||(18689552-18689633)
chr4 (83-164)||(7634057-7634136)
[»] scaffold0240 (2 HSPs)
scaffold0240 (83-164)||(1635-1713)
scaffold0240 (81-162)||(14826-14904)
[»] scaffold0330 (1 HSPs)
scaffold0330 (83-131)||(17647-17695)
[»] scaffold0054 (1 HSPs)
scaffold0054 (81-131)||(37718-37768)
[»] scaffold0251 (1 HSPs)
scaffold0251 (83-164)||(9679-9759)
[»] scaffold0024 (1 HSPs)
scaffold0024 (81-164)||(145711-145792)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 45168288 - 45168530
Alignment:
Q  22 taaacattttagtattgaatatggatattgtcacagtacggaa----gcaagggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccga 117  Q
    |||||||||||||||||||||||||| ||||||  ||||||||    ||||||||| |||| |||||||||||||||||||||||||||||||||| |||    
T  45168288 taaacattttagtattgaatatggatcttgtcattgtacggaaggaagcaagggttagcaagtgctaaacctagattgaaataaacaagtttgcaagcga 45168387  T
Q  118 caaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcata 217  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||| | || ||||||| |||||||    
T  45168388 caaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaaaatctcgaataattttattgaataaaaaaatatgcctcttagtctgcata 45168487  T
Q  218 acttctgcttatatagtgaaagaaataacaaactcgtggactg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45168488 acttctgcttatatagtgaaagaaataacaaactcgtggactg 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 339 - 456
Target Start/End: Original strand, 45168609 - 45168727
Alignment:
Q  339 ccctcgtacatcatatctagaggg-taagaacatgcttttctcactttgtggggatcaaaatggggtctttttcattttgattggacccaaaagagcctt 437  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45168609 ccctcttacatcatatctagaggggtaagaacatgcttttctcattttgtggggatcaaaatggggtctttttcattttgattggacccaaaacagcctt 45168708  T
Q  438 tctcaaaatgtggattcat 456  Q
    ||| |||||||||||||||    
T  45168709 tcttaaaatgtggattcat 45168727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 39913337 - 39913461
Alignment:
Q  130 aaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgctta 228  Q
    ||||| |||| |||||||| |||||||| ||| ||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||| |||    
T  39913337 aaatagaggggtccggaatccaccagaa-ttgggagaaaagtctcgaatatttttattgaatcaaaaa-tgtgcctcttaggctgcataagttctgttta 39913434  T
Q  229 tatagtgaaagaaataacaaactcgtg 255  Q
     ||| | ||||||||||||||| ||||    
T  39913435 aatactaaaagaaataacaaacccgtg 39913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 2472720 - 2472800
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  2472720 gctaaacctaaattgaaagagacaagtttgcaaccgacaaacttgtgaaa---atagggttccggaatccaccagaaattgaga 2472800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 41218774 - 41218665
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||||||| |||||||| ||||||||||| ||||||||| | |||||||||  |||||||||||||||||||| ||||| ||||||||| ||| | |||    
T  41218774 ttccggaatccaccagaa-ttgagagaaaagtctcgaatattattattgaat--aaaagtgtgtctcttaggctccataagttctgcttaaatactaaaa 41218678  T
Q  239 gaaataacaaact 251  Q
    |||||||||||||    
T  41218677 gaaataacaaact 41218665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 5128879 - 5128814
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctct 206  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5128879 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctct 5128814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 53012996 - 53012882
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||||||| |||||||| ||||||||||| ||||||||| | ||| |||||  ||||||||| |||||||||| ||| | || ||||||||||||||||    
T  53012996 ttccggaatccaccagaa-ttgagagaaaagtctcgaatattattaatgaat--aaaagtgtgcctcttaggctacattagttatgcttatatagtgaaa 53012900  T
Q  239 gaaataacaaactcgtgg 256  Q
    |||||||||||| |||||    
T  53012899 gaaataacaaacccgtgg 53012882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 3068994 - 3069107
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||||||| ||||| |||||||||||||| | ||||||| | ||| |||||  |||||||||  ||||||||| ||||| || ||||||||||||||||    
T  3068994 ttccggaatccacca-aaattgagagaaaagtatcgaatattattaatgaat--aaaagtgtgcatcttaggctacataagttatgcttatatagtgaaa 3069090  T
Q  239 gaaataacaaactcgtg 255  Q
    |||||||||||||||||    
T  3069091 gaaataacaaactcgtg 3069107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 43304079 - 43304191
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||| ||| |||||||| ||||||||||| ||||||||| | ||| ||||| |||    |||||||||||||| ||||| |||||||||||||||||||    
T  43304079 ttccgaaatccaccagaa-ttgagagaaaagtctcgaatattattaatgaataaaa----gtgtctcttaggctacataagttctgcttatatagtgaaa 43304173  T
Q  239 gaaataacaaactcgtgg 256  Q
    |||||||||||| |||||    
T  43304174 gaaataacaaacccgtgg 43304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 43306791 - 43306898
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||| ||| |||||||| ||||||||||| ||| ||||| | ||| |||||  ||||||||| |||||||||| ||||| |||||||||||||||||||    
T  43306791 ttccgtaatccaccagaa-ttgagagaaaagtcttgaatattattaatgaat--aaaagtgtgcctcttaggctacataagttctgcttatatagtgaaa 43306887  T
Q  239 gaaataacaaa 249  Q
    |||||||||||    
T  43306888 gaaataacaaa 43306898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 3063872 - 3063970
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtg 255  Q
    ||||||||||||| ||||||||| | ||| |||||  ||||||||  |||||||||| ||||| || |||||||||||||||||||||||||||| ||||    
T  3063872 aattgagagaaaagtctcgaatattattaatgaat--aaaagtgtacctcttaggctacataagttatgcttatatagtgaaagaaataacaaacccgtg 3063969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 25857746 - 25857653
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||||||||||| |||| |||| | ||||||||| ||||||||||||||||||||| ||||| || |||||| ||| | |||||||||||||||    
T  25857746 aattgagagaaaagtctcaaatattattattgaat-aaaaagtgtgtctcttaggctacataagttatgcttaaatactaaaagaaataacaaac 25857653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 19795208 - 19795115
Alignment:
Q  156 aaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa-cttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||| ||||||||||| ||||||||||||||||| |||||   |||||||||||||||||||  ||||| ||| ||||  |||||||||||||||    
T  19795208 aaatttagagaaaatctggaataattttattgaataaaaaa--ttgtctcttaggctgcataatgttctgtttaaatagcaaaagaaataacaaac 19795115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 5128966 - 5128916
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  5128966 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 5128916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 43303992 - 43304042
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  43303992 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 43304042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 43306677 - 43306754
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| | |||||||||||||||    
T  43306677 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaa 43306754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 19949957 - 19949861
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgt 254  Q
    ||||||||||||| |||| |||| ||||||| ||| | ||||||   |||||||||||||||| ||||| ||| ||| | ||||||||||||| |||||    
T  19949957 aattgagagaaaagtctctaatatttttattcaatgataaagtga--ctcttaggctgcataagttctgtttaaatactaaaagaaataacaacctcgt 19949861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 19999262 - 19999317
Alignment:
Q  199 gtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgt 254  Q
    |||||| ||||||||||||| ||||| ||| ||| | |||||||||||||||||||    
T  19999262 gtgtcttttaggctgcataagttctgtttaaatactaaaagaaataacaaactcgt 19999317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 40593564 - 40593605
Alignment:
Q  143 cggaattcaccagaaattgagagaaaatctcgaataattttat 185  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  40593564 cggaatccacca-aaattgagagaaaatctcgaataattttat 40593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 22921969 - 22922084
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaag 239  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  22921969 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaggtgtgtctcttaggctgcataagttctgcatatatagtgaaag 22922067  T
Q  240 aaataacaaactcgtgg 256  Q
    ||||||||||| |||||    
T  22922068 aaataacaaacccgtgg 22922084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 6845311 - 6845195
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    |||||| |||||| ||||| ||||||||||||||||||||||| | ||| |||||||||||||||  |||||||| | ||||| ||||||||||||||||    
T  6845311 agggtttcggaatccaccaaaaattgagagaaaatctcgaatattattaatgaatcaaaaagtgt--ctcttaggatacataagttctgcttatatagtg 6845214  T
Q  236 aaagaaataacaaactcgt 254  Q
    |||||||||||||||||||    
T  6845213 aaagaaataacaaactcgt 6845195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 42890347 - 42890253
Alignment:
Q  162 agagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||| |||||||||||||||||||| |||||    
T  42890347 agagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttttgcttatgtagtgaaagaaataacaaacccgtgg 42890253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 22926771 - 22926880
Alignment:
Q  144 ggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaat 243  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| |||   ||||||||||||||||||||| ||||||||||||||||||||||||    
T  22926771 ggaatccaccagaa-ttgagagaaaatctcgaatatttttattgaattaaat--tgtgtctcttaggctgcataagttctgcttatatagtgaaagaaat 22926867  T
Q  244 aacaaactcgtgg 256  Q
    ||||||| |||||    
T  22926868 aacaaacccgtgg 22926880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 42891783 - 42891878
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtga 236  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  42891783 ttccggaatccaccagaa-ttgagagaaaatctcaaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtga 42891878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 22512165 - 22512275
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaat-caaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||| | ||||| | |||||||||||||||||    
T  22512165 ttccgaaatccaccagaa-ttgagagaaaatctcgaataattttattgaataaaaaaagtgtgactcttaggttacataagtgctgcttatatagtgaaa 22512263  T
Q  239 gaaataacaaac 250  Q
    ||||||| ||||    
T  22512264 gaaataataaac 22512275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 18468732 - 18468611
Alignment:
Q  55 cagtacggaagcaagggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcacca 154  Q
    |||||| |||||||||||| ||||  ||||||||||| | ||||  |||||| |||||| ||||||||||||||||   ||||||||||||||| |||||    
T  18468732 cagtacagaagcaagggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaa---atagggttccggaatccacca 18468636  T
Q  155 gaaattgagagaaaa-tctcgaata 178  Q
    ||||||||||||||| |||||||||    
T  18468635 gaaattgagagaaaagtctcgaata 18468611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 37189841 - 37189725
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||| | ||| ||||| |||||||||  ||||| |||| ||||  ||||| |||||||| |    
T  37189841 agggttccgaaatccaccagaaattgaga-aaaatctcgaatattattaatgaataaaaaagtgtacctcttgggctacatatgttctgtttatatagcg 37189743  T
Q  236 aaagaaataacaaactcg 253  Q
    ||||||||||||||||||    
T  37189742 aaagaaataacaaactcg 37189725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 18180802 - 18180910
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa-cttctgcttatatagtgaaa 238  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||  ||||| ||| |||   |||    
T  18180802 ttccagaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaa--gtgcctcttaggctacataatgttctgtttaaataacaaaa 18180898  T
Q  239 gaaataacaaac 250  Q
    ||||||||||||    
T  18180899 gaaataacaaac 18180910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 23573538 - 23573445
Alignment:
Q  156 aaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    |||||||||||||| ||||||||| | ||| |||||  ||||||||| |||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  23573538 aaattgagagaaaagtctcgaatattattaatgaat--aaaagtgtgcctcttaggctacataagttccgcttatatagcgaaagaaataacaaac 23573445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 20693855 - 20693776
Alignment:
Q  83 taaacctagattgaaa-taaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||   ||| ||||||||||| || ||||||||||||    
T  20693855 taaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaa---atatggttccggaatccatcagaaattgaga 20693776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 22520918 - 22520967
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaat 190  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  22520918 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaat 22520967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 23570654 - 23570591
Alignment:
Q  68 agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  23570654 agggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 23570591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 2189753 - 2189803
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  2189753 gctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 2189803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 2687800 - 2687719
Alignment:
Q  81 gctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||| |||| | ||||||||||||| ||||||||||||||||   |||||||||  |||| ||| |||||||||||    
T  2687800 gctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa---atagggttctagaatccacaagaaattgaga 2687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 22926680 - 22926730
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  22926680 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 22926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 23570554 - 23570449
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    |||| |||| |||||||| ||||||||||| ||||||||| | ||  |||||  ||||||||| |||||||||   |||| ||| |||||||||||||||    
T  23570554 ttccagaatgcaccagaa-ttgagagaaaagtctcgaatattatttatgaat--aaaagtgtgcctcttaggc---ataagttccgcttatatagtgaaa 23570461  T
Q  239 gaaataacaaac 250  Q
    ||||||||||||    
T  23570460 gaaataacaaac 23570449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 24731285 - 24731204
Alignment:
Q  81 gctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||||   ||||||||||||| | ||||||||||||||   |||| ||| ||||||||| ||||||||||||    
T  24731285 gctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaa---atagagtttcggaattcatcagaaattgaga 24731204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 42890449 - 42890399
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  42890449 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 42890399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 42891696 - 42891746
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  42891696 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 42891746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 16598329 - 16598256
Alignment:
Q  59 acggaagcaagggttcgcaaatgctaaacctagatt-gaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||| |||| ||||  ||||||| |||||| |||| |||||||||||||  |||||||||||||||||    
T  16598329 acggaagcaatggttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaa 16598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 22921855 - 22921932
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  || |||||||||| |||||||||||||||||    
T  22921855 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaa 22921932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 2609546 - 2609605
Alignment:
Q  100 aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattga 162  Q
    ||||||||||||||  |||||||||||||||   |||||||| | ||||||||||||||||||    
T  2609546 aaacaagtttgcaagtgacaaacttgtgaaa---atagggttacagaattcaccagaaattga 2609605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 22512065 - 22512128
Alignment:
Q  68 agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| ||||  ||||||||||| | ||||  ||||||||||||| |||||||||||||||||    
T  22512065 agggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 22512128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 22519365 - 22519428
Alignment:
Q  68 agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| ||||  ||||||||||| | ||||  ||||||||||||| |||||||||||||||||    
T  22519365 agggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 22519428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 6845420 - 6845343
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||| ||| ||| |||||||||||||    
T  6845420 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaa 6845343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 14130201 - 14130142
Alignment:
Q  102 acaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||| ||| ||| |||||||||   || ||||||||||| |||||||||||||||    
T  14130201 acaagtttgcaagcgataaatttgtgaaaa---taaggttccggaatccaccagaaattgaga 14130142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 26150660 - 26150601
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtg 199  Q
    |||| |||| |||||||| ||||||||||| ||||||||| ||||||||||| ||||||||    
T  26150660 ttccagaatccaccagaa-ttgagagaaaagtctcgaatatttttattgaatgaaaaagtg 26150601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 50857563 - 50857678
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaag 239  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  50857563 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgtatcaaaaagtgtgcctcttaggctgcataagttctgcttatatagtgaaag 50857661  T
Q  240 aaataacaaactcgtgg 256  Q
     |||||||||| |||||    
T  50857662 taataacaaacccgtgg 50857678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 8931195 - 8931080
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| || || ||||||||||||||   |||||||||| ||||||||||||||||    
T  8931195 agggttccggaatccaccagaaattgagagaaaatctcgaatattattaatg-ataaaaaagtgtgtctc---ggctgcataa-ttctgcttatatagtg 8931101  T
Q  236 aaagaaataacaaactcgtgg 256  Q
    |||||||||||||||||||||    
T  8931100 aaagaaataacaaactcgtgg 8931080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 31915606 - 31915518
Alignment:
Q  82 ctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctc 173  Q
    |||||| ||| |||||| |||||||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||||| ||| ||||    
T  31915606 ctaaacttaggttgaaagaaacaagtttgcaagcgacaaacttgtgaaa---atagggttccggaatccaccagaaattgagaaaaactctc 31915518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 10927256 - 10927171
Alignment:
Q  75 gcaaatgctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||| |||||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||| |||||||||||||||    
T  10927256 gcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaa-----agggttccggaatccaccagaaattgaga 10927171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 8931304 - 8931227
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  |||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  8931304 cagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaa 8931227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 13441718 - 13441826
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||||||| || ||||| ||||||||||| |||| |||| | ||| |||||  ||||||||| ||||||||||  |||| ||| |||||||||||||||    
T  13441718 ttccggaatccatcagaa-ttgagagaaaagtctctaatattattaatgaat--aaaagtgtgcctcttaggctatataagttcagcttatatagtgaaa 13441814  T
Q  239 gaaataacaaac 250  Q
    ||||||||||||    
T  13441815 gaaataacaaac 13441826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 12944174 - 12944093
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||||   ||| ||||||||| ||||| |||||||||||||||    
T  12944174 gctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgt---aaaaatagggttctggaatccaccagaaattgaga 12944093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 28660771 - 28660852
Alignment:
Q  75 gcaaatgctaaacctagattga-aataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaa 158  Q
    ||||| ||||||||||||| || || |||||||||||||| ||||||||||||||||   ||||||||||| ||| |||||||||    
T  28660771 gcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaa---atagggttccgaaatccaccagaaa 28660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 23987630 - 23987549
Alignment:
Q  85 aacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaa-atatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||| |||| | ||||| ||||||| ||||||||||||||||| ||| | ||||||||||| |||||||||||||||    
T  23987630 aacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaatatagaaggttccggaatccaccagaaattgaga 23987549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 31913434 - 31913359
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaat 159  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||   ||| ||||| ||||| ||| ||||||||||    
T  31913434 gctaaacctaggttgaaagaaacaagtttgcaagcgacaaacttgt---aaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 8221547 - 8221465
Alignment:
Q  80 tgctaaacctagattgaa-ataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||| |||||||| | | |||||||||||| |||||||||| ||||||   |||||||| ||||| |||||||||||||||    
T  8221547 tgctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaa---tagggttctggaatccaccagaaattgaga 8221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 26981568 - 26981490
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaatt 160  Q
    |||||| ||||||||||| |||||||||||||| ||| |||||||| ||||||||| |||| || ||| || ||||||||    
T  26981568 gctaaatctagattgaaagaaacaagtttgcaagcgaaaaacttgt-aaaaatatatggtttcgaaatccatcagaaatt 26981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 12486347 - 12486392
Alignment:
Q  143 cggaattcaccagaaattgagagaaaatctcgaataattttattgaa 189  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  12486347 cggaatccacca-aaattgagagaaaatctcgaataattttattgaa 12486392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 50713771 - 50713690
Alignment:
Q  81 gctaaacctagattgaaataa-acaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||||  | ||||||| |||  |||||||||||||||||   ||||||| |||||| |||||||||||||||    
T  50713771 gctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaa---tagggtttcggaatccaccagaaattgaga 50713690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 13444021 - 13444070
Alignment:
Q  82 ctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  13444021 ctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 13444070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 13444107 - 13444203
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||| ||| |||||||| ||||||||||| |||| |||| | ||| ||||| ||||  |||| |||||||||| ||||| |||||||||||||||||||    
T  13444107 ttccgtaatccaccagaa-ttgagagaaaagtctctaatattattactgaataaaaa--tgtgcctcttaggctacataagttctgcttatatagtgaaa 13444203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 42071456 - 42071489
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaat 190  Q
    |||||||||| |||||||||||||||||||||||    
T  42071456 aattgagagagaatctcgaataattttattgaat 42071489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 43681520 - 43681468
Alignment:
Q  81 gctaaacctagattgaaataaa--caagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||||||||| |||  ||||||||||| ||||||| |||||||||    
T  43681520 gctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaa 43681468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 50857449 - 50857526
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  || ||||||| || |||||||||||||||||    
T  50857449 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaa 50857526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 9194976 - 9195020
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaacttgtg 127  Q
    |||||||||||||||  |||||||||||||| |||||||| ||||    
T  9194976 taaacctagattgaatgaaacaagtttgcaagcgacaaacatgtg 9195020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 46765 - 46932
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataat 180  Q
    ||||||||||||| ||||  ||||||||||||| |||||||| | | ||||   || ||||||||||| ||||| ||||||||||||||||||||||| |    
T  46765 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatcaaaa--ttaaggttccggaatccaccaaaaattgagagaaaatctcgaatatt 46862  T
Q  181 tttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
     ||| ||||| ||||||||||||||||| |||| |||| || ||||||||||||||||||||||||||||    
T  46863 attaatgaataaaaaagtgtgtctcttaagctggataagttttgcttatatagtgaaagaaataacaaac 46932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 45376 - 45490
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    |||||||| |||| ||||||||||||||||||||||||||||| | ||| ||||| |||| || || |||||||||||||||| |||| |||||||||||    
T  45376 agggttccagaatccaccagaaattgagagaaaatctcgaatattattaatgaataaaaatgtttgcctcttaggctgcataagttctccttatatagtg 45475  T
Q  236 aaagaaataacaaac 250  Q
    |||||||||| ||||    
T  45476 aaagaaataataaac 45490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 3536009 - 3535891
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  3536009 agggttccggaatccaccagaaattgagagaaaatctcgaatattattaatgaat--aaaagtgtgcctcttaggctgcataagttctgcttatatagtg 3535912  T
Q  236 aaagaaataacaaactcgtgg 256  Q
    ||||||||||||||| |||||    
T  3535911 aaagaaataacaaacccgtgg 3535891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 3542220 - 3542102
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  3542220 agggttccggaatccaccagaaattgagagaaaatctcgaatattattaatgaat--aaaagtgtgcctcttaggctgcataagttctgcttatatagtg 3542123  T
Q  236 aaagaaataacaaactcgtgg 256  Q
    ||||||||||||||| |||||    
T  3542122 aaagaaataacaaacccgtgg 3542102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 30052179 - 30052064
Alignment:
Q  135 tagggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagt 234  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||| ||||||||||||||||| ||||||||| || ||||||||||||    
T  30052179 tagggttccggaatccaccaaaaattgagagaaaatctcgaatattattaatgaataaaaaagtgtgtctcttaagctgcataagttttgcttatatagt 30052080  T
Q  235 gaaagaaataacaaac 250  Q
    ||||||||||||||||    
T  30052079 gaaagaaataacaaac 30052064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 30049892 - 30049777
Alignment:
Q  135 tagggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagt 234  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||| ||||||||||||||||| |||| |||| || ||||||||||||    
T  30049892 tagggttccggaatccaccaaaaattgagagaaaatctcgaatattattaatgaataaaaaagtgtgtctcttaagctgaataagttttgcttatatagt 30049793  T
Q  235 gaaagaaataacaaac 250  Q
    ||||||||||||||||    
T  30049792 gaaagaaataacaaac 30049777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 11190469 - 11190357
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa-cttctgcttatatagtgaaa 238  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||| ||| |||||  ||||| ||| ||||  |||    
T  11190469 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaa--gtgtcttttaagctacataatgttctgtttaaatagcaaaa 11190373  T
Q  239 gaaataacaaactcgt 254  Q
    ||||||||||||||||    
T  11190372 gaaataacaaactcgt 11190357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 29340914 - 29341040
Alignment:
Q  129 aaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgctt 227  Q
    |||||| ||| ||||||||| ||| |||| ||||||||||| ||||||||| | ||| ||||| ||||||||| | ||||||||||||||| ||||||||    
T  29340914 aaaataaaggtttccggaatccactagaa-ttgagagaaaagtctcgaatattattaatgaat-aaaaagtgtttgtcttaggctgcataagttctgctt 29341011  T
Q  228 atatagtgaaagaaataacaaactcgtgg 256  Q
    |||||||||  |||||||||||| |||||    
T  29341012 atatagtgattgaaataacaaacccgtgg 29341040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 18727171 - 18727112
Alignment:
Q  75 gcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaata 134  Q
    ||||| |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||    
T  18727171 gcaaacgctaaacctagattgaaaaacacaagttcgcaagcgacaaacttgtgaaaaata 18727112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 26571104 - 26571045
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa 218  Q
    |||||||||||||||||||||||||||||||||| || ||  ||| ||||||||||||||||    
T  26571104 aattgagagaaaatctcgaataattttattgaatgaataa--gtggctcttaggctgcataa 26571045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 29340838 - 29340888
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  29340838 gctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaa 29340888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 3536118 - 3536041
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  3536118 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 3536041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 30050000 - 30049923
Alignment:
Q  55 cagtacggaagc-aagggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||| ||||||| ||||  |||||||||| || ||||  ||||||||||||| |||||||||||||||||    
T  30050000 cagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 30049923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 2939848 - 2939918
Alignment:
Q  179 attttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||||| ||| | |||||||||| ||||    
T  2939848 attttattgaatgaaaaagtgtc-ctcttaggctgcataagttctgcttaaatactaaaagaaataataaac 2939918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 30052260 - 30052210
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  30052260 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 30052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 3542329 - 3542252
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  |||||||||| || |||||||||||||||||    
T  3542329 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaa 3542252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 33615538 - 33615614
Alignment:
Q  84 aaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattga 162  Q
    |||||||||| |||| | ||||||||||||| ||||||||||||||||   |||||||| | |||||||||| |||||||    
T  33615538 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa---atagggtttcagaattcaccataaattga 33615614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 12882177 - 12882075
Alignment:
Q  85 aacctagattga-aataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataatttt 183  Q
    |||||||||||| || | ||||||||  || |||||||||||||||||   ||||||| |||||| ||||||||||||||| ||| |||| || ||| ||    
T  12882177 aacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaa---tagggtttcggaatccaccagaaattgagaaaaactctctaa-aatatt 12882082  T
Q  184 attgaat 190  Q
    |||||||    
T  12882081 attgaat 12882075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 1127312 - 1127231
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||| |||  |||||||||||||| ||||||| ||||||||   |||| ||| |||||| ||||| |||||||||    
T  1127312 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaa---atagtgtttcggaatacaccaaaaattgaga 1127231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 27822170 - 27822239
Alignment:
Q  101 aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctc 173  Q
    ||||||||| ||| ||||||||||||||||   | ||||||||| ||| ||||||||||||||| ||| ||||    
T  27822170 aacaagttttcaagcgacaaacttgtgaaa---acagggttccgaaatccaccagaaattgagaaaaactctc 27822239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 11658988 - 11658939
Alignment:
Q  82 ctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||||||||  ||||| ||||||| ||| |||||||||||||    
T  11658988 ctaaacctagattgaaaagaacaaatttgcaagcgataaacttgtgaaaa 11658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 19232279 - 19232188
Alignment:
Q  156 aaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||||||| |||| ||||||||| | |||||||||   |||||||||||| |||||||||||| |||| |||| ||| | |||||||| ||||||    
T  19232279 aaattgagataaaagtctcgaatattgttattgaat---aaagtgtgtctcgtaggctgcataagttct-cttaaatactaaaagaaattacaaac 19232188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 2339167 - 2339248
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttct 223  Q
    ||||| ||| |||||||| ||||||||||| |||||| |||||||||||||| ||||||  || |||||||||||||||| ||||    
T  2339167 ttccgaaatccaccagaa-ttgagagaaaagtctcga-taattttattgaatgaaaaag-atgcctcttaggctgcataagttct 2339248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 3565691 - 3565600
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||||||||||| ||||||||| ||||||||||| ||||   ||| ||||| |||| ||||| ||||| ||| ||| | || ||||||||||||    
T  3565691 aattgagagaaaagtctcgaatatttttattgaatgaaaa---gtgcctctttggctacataagttctgtttaaatactaaatgaaataacaaac 3565600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 40778909 - 40779020
Alignment:
Q  144 ggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaat 243  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||    
T  40778909 ggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttagactacataagttctgcttatatagtgaaagaaat 40779007  T
Q  244 aacaaactcgtgg 256  Q
    || |||| |||||    
T  40779008 aataaacacgtgg 40779020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 21849106 - 21849204
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || ||||||| ||||| ||  ||||||||||||||||||||||||||| |||||    
T  21849106 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtacct-ttaggctacataagtttcgcttatatagtgaaagaaataacaaacccgtgg 21849204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 19497356 - 19497467
Alignment:
Q  101 aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 200  Q
    ||||||||||||| ||||||||||||||||   ||||||||||| ||| || || ||||||||| |||||||| || ||| |||||||||||||||  ||    
T  19497356 aacaagtttgcaagcgacaaacttgtgaaa---atagggttccgaaatccatcaaaaattgagaaaaaatctctaa-aatattattgaatcaaaaa--gt 19497449  T
Q  201 gtctcttaggctgcataa 218  Q
    | ||||||||||||||||    
T  19497450 gcctcttaggctgcataa 19497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 19677252 - 19677353
Alignment:
Q  143 cggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaa 241  Q
    |||||| |||||||| ||||||||||| ||||||||| ||||||||||| | |||||||| |||||||| ||||||| ||||| ||| ||| | ||||||    
T  19677252 cggaatccaccagaa-ttgagagaaaagtctcgaata-ttttattgaat-acaaagtgtgcctcttaggatgcataagttctgtttaaatactaaaagaa 19677348  T
Q  242 ataac 246  Q
    |||||    
T  19677349 ataac 19677353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 21848970 - 21849047
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  || |||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  21848970 cagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 21849047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 26140422 - 26140320
Alignment:
Q  60 cggaagcaagggttcgcaaatgctaaacctagattgaaa-taaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaa 158  Q
    ||||||||  |||| ||||| |||||| |||||||||||  ||||||| |||||| |||||||||| |||||   |||||||||  |||| ||||| |||    
T  26140422 cggaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaa---atagggttcaagaatccaccaaaaa 26140326  T
Q  159 ttgaga 164  Q
    ||||||    
T  26140325 ttgaga 26140320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 40778818 - 40778868
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||| ||||    
T  40778818 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaa 40778868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 18252472 - 18252423
Alignment:
Q  83 taaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||| |||||| ||||||||||||| |||||||| ||||||||    
T  18252472 taaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaa 18252423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 33655598 - 33655482
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaag 239  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||   |||| |||||||||||||||    
T  33655598 ttccggaatccaccagaaattgagagaaaatctcgaataattttattgaatgaaaaagtgtgcctcttaggctaaattggttctccttatatagtgaaag 33655499  T
Q  240 aaataacaaactcgtgg 256  Q
    ||||||||||| |||||    
T  33655498 aaataacaaacccgtgg 33655482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 27952437 - 27952532
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtga 236  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  27952437 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtga 27952532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 27956273 - 27956368
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtga 236  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  27956273 ttccggaatccaccagaa-ttgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtga 27956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 136 - 256
Target Start/End: Complemental strand, 31634079 - 31633960
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtg 235  Q
    |||||| |||||| |||||||||||||||||||||||| |||| | ||| ||||| ||||||| || ||||| |||||||||| |||| |||||||||||    
T  31634079 agggtttcggaatccaccagaaattgagagaaaatctcaaatattattaatgaataaaaaagt-tgcctcttcggctgcataagttctacttatatagtg 31633981  T
Q  236 aaagaaataacaaactcgtgg 256  Q
    |||||||||||||||||||||    
T  31633980 aaagaaataacaaactcgtgg 31633960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 2165949 - 2165779
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataatt 181  Q
    ||||||||||| ||||  ||||||||||||| | |||||||| | |||| || | | || | |||| ||||| |||||||||||||| ||||||||| |     
T  2165949 taaacctagatagaaaagaacaagtttgcaagcaacaaacttatcaaaa-taaatgttttcagaatccacca-aaattgagagaaaagtctcgaatatta 2165852  T
Q  182 ttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    ||| ||||| ||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2165851 ttaatgaataaaaa--tgtgtctcttaggctgcataagttctccttatatagtgaaagaaataacaaactcgtgg 2165779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 2155921 - 2155823
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtg 255  Q
    ||||||||||||| ||| ||||| | |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  2155921 aattgagagaaaagtcttgaatattattattgaat--aaaagtgtgtctcttaggctgcataagttctgcttatatagtgaaagaaataacaaacacgtg 2155824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 31636312 - 31636197
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgct--tatatag 233  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| | ||| ||||| ||||||| |||||||| |||| ||||| |||| ||  |||||||    
T  31636312 agggttccggaatccaccagaaattgagagaaaatcttgaatattattaatgaataaaaaagt-tgtctcttcggctacataagttctacttatatatag 31636214  T
Q  234 tgaaagaaataacaaac 250  Q
    |||||||||||||||||    
T  31636213 tgaaagaaataacaaac 31636197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 22264389 - 22264292
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa-cttctgcttatatagtgaaagaaataacaaactcgtg 255  Q
    |||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||  || |||||| |||| |||||||||||||||| ||||    
T  22264389 aattgagataaaatctcgaataattttattgaatcaaaaa--gtgcctcttaggctgcataatgttatgcttaaatagcgaaagaaataacaaacccgtg 22264292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 23457704 - 23457623
Alignment:
Q  81 gctaaacctagattgaaa-taaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||   ||||||||||||||| ||||| |||||||||    
T  23457704 gctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaa---atagggttccggaatccaccaaaaattgaga 23457623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 15129447 - 15129274
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataa 179  Q
    ||||||||||||| ||||  |||||||| |||| |||||||||||||||||   ||||||||| ||||  |||||||| | |||||||| ||||  | ||    
T  15129447 gctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaa---tagggttccagaatcaaccagaaaat-agagaaaagtctctga-aa 15129353  T
Q  180 ttttattgaatcaa--aaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    | |||| ||   ||  |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  15129352 tattatagatgaaataaaagtgtgcctcttaggctacataagttctgcttatatagtgaaagaaataacaaacccgtgg 15129274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 22011406 - 22011288
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaa--aaagtgtgtctcttaggctgcataacttctgcttatatagtga 236  Q
    ||||||||| |||||||| ||||||||||| ||||||||| | ||| ||||| ||  |||||  |||||||||||| ||||| || ||||||||||||||    
T  22011406 ttccggaatccaccagaa-ttgagagaaaagtctcgaatattattaatgaataaataaaagtcggtctcttaggctacataagttttgcttatatagtga 22011308  T
Q  237 aagaaataacaaactcgtgg 256  Q
    ||||||||||| || |||||    
T  22011307 aagaaataacagacccgtgg 22011288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 8781488 - 8781407
Alignment:
Q  136 agggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataac 219  Q
    |||||| || ||| |||||||| ||||||| |||||||||||||||||||||||| |||||  ||| |||||||||||||||||    
T  8781488 agggtttcgaaatccaccagaa-ttgagagtaaatctcgaataattttattgaatgaaaaa-agtgcctcttaggctgcataac 8781407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 21772432 - 21772352
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||| |||||||||| |||||||||||||| |||||||||| |||||   |||||||||| |||| || || |||||||||    
T  21772432 gctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaa---atagggttcctgaatccatcacaaattgaga 21772352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 27952323 - 27952400
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  27952323 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 27952400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 31634188 - 31634111
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||| ||||||||||||| ||||  ||||||||||| | |||||||||||||||||    
T  31634188 cagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaa 31634111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 33051676 - 33051595
Alignment:
Q  81 gctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||| ||||||| | ||||||||||||| |||||||||| |||||   ||||||||| ||||| ||| |||||||||||    
T  33051676 gctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaa---atagggttctggaatccactagaaattgaga 33051595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 33655685 - 33655635
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| |||| | |||||||||||| |||||||||||||||||    
T  33655685 gctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaa 33655635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 36647350 - 36647300
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  36647350 gctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 36647300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 2156051 - 2155974
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||| | |||||||||||||||||    
T  2156051 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaa 2155974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 22011520 - 22011443
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  |||||||||||||  ||||||||||||||||    
T  22011520 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaa 22011443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 31636421 - 31636344
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||| ||||||||| |||||||||||||||||    
T  31636421 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaa 31636344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 12966532 - 12966445
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctc 173  Q
    |||| |||||||||||  |||||||| |||| |||| |||||||||||   ||||||||||| ||| ||||| ||||||||| ||| ||||    
T  12966532 taaatctagattgaaaagaacaagttcgcaagcgacgaacttgtgaaa---atagggttccgaaatccaccaaaaattgagaaaaactctc 12966445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 28737969 - 28737913
Alignment:
Q  75 gcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||| |||||||||||||||||||  | ||||||||||| |||||||||| ||||||    
T  28737969 gcaagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaa 28737913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 32162002 - 32162081
Alignment:
Q  83 taaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||| ||||  ||||||||||||||  |||||||||||||||   ||||||||| ||||| ||||||||| |||||    
T  32162002 taaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaa---atagggttcaggaatccaccagaaactgaga 32162081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 27956159 - 27956236
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||| | ||||||    
T  27956159 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaa 27956236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 4184963 - 4184881
Alignment:
Q  104 aagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataattttattgaat 190  Q
    ||||| |||| |||||||||||||||||   ||||||| |||||| ||| ||||||||||| ||| |||| || ||| |||||||||    
T  4184963 aagttcgcaagcgacaaacttgtgaaaa---tagggtttcggaatccacgagaaattgagaaaaactctctaa-aatattattgaat 4184881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 18725747 - 18725820
Alignment:
Q  175 aataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    |||||||||||||||| |||||  ||||||||||| | |||||| || || ||| ||| | |||||||||||||||    
T  18725747 aataattttattgaatgaaaaa--gtgtctcttagaccgcataagttttgtttaaatactaaaagaaataacaaac 18725820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 23456638 - 23456582
Alignment:
Q  76 caaatgctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| |||||||| |||||||  |||||||||||||| |||||||||| ||||||    
T  23456638 caaatgttaaacctatattgaaaagaaacaagtttgcaagcgacaaacttttgaaaa 23456582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 4303404 - 4303305
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||||||||||||||||||||| |||||    
T  4303404 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagtcctgtttatatagtgaaagaaataacaaacccgtgg 4303305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 13882805 - 13882918
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaag 239  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||| | ||||| ||||||||||||||||||||    
T  13882805 ttccggaatccaccagaa-ttgagagaaaatctcaaataattttattgaatcaaaaagtgt--ctcttaggatacataagttctgcttatatagtgaaag 13882901  T
Q  240 aaataacaaactcgtgg 256  Q
    ||||||||||| |||||    
T  13882902 aaataacaaacccgtgg 13882918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 4300511 - 4300412
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||  |||||||||||||||| |||||    
T  4300511 aattgagagaaaatctcaaataatttgattgaatcaaaaagtgtgtctcttaggctacataagttctccttatataccgaaagaaataacaaacccgtgg 4300412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 13886323 - 13886420
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||| | ||||| ||| ||||||||||||||||||||||||||| |||||    
T  13886323 aattgagagaaaatctcgaatgattttattgaatcaaaaa--gtgtctcttaggatacataagttcagcttatatagtgaaagaaataacaaacccgtgg 13886420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 24840201 - 24840120
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaa---atagggttccggaatccaccagaaattgaga 24840120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 859264 - 859389
Alignment:
Q  129 aaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgctt 227  Q
    |||||| ||| ||||||||| |||||||| ||||||||||| |||| |||| | ||| |||||  |||||||||  | ||||||| ||||| || || ||    
T  859264 aaaataaaggtttccggaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaat--aaaagtgtgcattttaggctacataagttatgttt 859360  T
Q  228 atatagtgaaagaaataacaaactcgtgg 256  Q
    |||||||||||||||||||||||||||||    
T  859361 atatagtgaaagaaataacaaactcgtgg 859389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 1217268 - 1217393
Alignment:
Q  129 aaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgctt 227  Q
    |||||| ||| ||||||||| |||||||| ||||||||||| |||| |||| | ||| |||||  |||||||||  | ||||||| ||||| || || ||    
T  1217268 aaaataaaggtttccggaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaat--aaaagtgtgcattttaggctacataagttatgttt 1217364  T
Q  228 atatagtgaaagaaataacaaactcgtgg 256  Q
    |||||||||||||||||||||||||||||    
T  1217365 atatagtgaaagaaataacaaactcgtgg 1217393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 3778748 - 3778820
Alignment:
Q  89 tagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||   ||||||||||||||| |||||||||||||||    
T  3778748 tagattgaaatgaacaagtttgcaagcgagaaacttgtgaaa---atagggttccggaatccaccagaaattgaga 3778820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 5678346 - 5678438
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||||||||||| ||||||||||||||||||||| |||||  |||||||||| ||||||||| ||||| ||| ||| | |||||| ||||||||    
T  5678346 aattgagagaaaagtctcgaataattttattgaatgaaaaa--gtgtctcttaagctgcataagttctgtttaaatactaaaagaagtaacaaac 5678438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 5703398 - 5703490
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaac 250  Q
    ||||||||||||| ||||||||||||||||||||| |||||  |||||||||| ||||||||| ||||| ||| ||| | |||||| ||||||||    
T  5703398 aattgagagaaaagtctcgaataattttattgaatgaaaaa--gtgtctcttaagctgcataagttctgtttaaatactaaaagaagtaacaaac 5703490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 1220613 - 1220666
Alignment:
Q  203 ctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 256  Q
    |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  1220613 ctcttaggctacataagttctgtttatatagtgaaagaaataacaaactcgtgg 1220666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 1369861 - 1369782
Alignment:
Q  83 taaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||  |||||||||||||| ||| |||||||| ||||   |||||||||||||| |||||||||||||||    
T  1369861 taaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaa---tagggttccggaatccaccagaaattgaga 1369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 27142722 - 27142643
Alignment:
Q  83 taaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||   |||||||||| |||  |||||||||||||||    
T  27142722 taaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaa---atagggttcctgaaaccaccagaaattgaga 27142643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 1220459 - 1220522
Alignment:
Q  68 agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| ||||| |||||||||| || ||||| ||||||||||||| |||||||||||||||||    
T  1220459 agggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaa 1220522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 4888721 - 4888795
Alignment:
Q  85 aacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattga 162  Q
    ||||||||| ||||  ||||||||||||| |||||||| |||||||   |||| ||||||||||||||||||||||||    
T  4888721 aacctagatagaaaagaacaagtttgcaagcgacaaacctgtgaaa---atagagttccggaattcaccagaaattga 4888795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 11229045 - 11228960
Alignment:
Q  75 gcaaatgctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattga 162  Q
    |||| ||||||||||||||||||| | ||||||||||||  |||||||| |||||||||   |||||||| |||| |||||||||||||    
T  11229045 gcaagtgctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaa---agggttccagaatccaccagaaattga 11228960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 13882691 - 13882768
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  13882691 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 13882768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 13886164 - 13886241
Alignment:
Q  55 cagtacggaagca-agggttcgcaaatgctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||  |||||| ||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  13886164 cagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 13886241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 11000857 - 11000935
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattg 161  Q
    ||||||||||||||||||  ||||||||| |||| ||||||||| |||||||   |||||||| ||||| ||||||||||||    
T  11000857 gctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaa---tagggttcaggaatccaccagaaattg 11000935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 27309646 - 27309697
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  27309646 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaa 27309697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 859188 - 859238
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  859188 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 859238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 1217192 - 1217242
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  1217192 gctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 1217242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 1883546 - 1883496
Alignment:
Q  82 ctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  1883546 ctaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaa 1883496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 1753628 - 1753680
Alignment:
Q  80 tgctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||||||||||    
T  1753628 tgctaaacctaaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaa 1753680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 1365729 - 1365624
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataat 180  Q
    ||||||||||||||||||  |||||||||| || |||  |||||||||||   ||||||||||  ||| ||||| ||||||||| ||| |||| || |||    
T  1365729 gctaaacctagattgaaaggaacaagtttgtaagcgatgaacttgtgaaa---atagggttccataatccaccaaaaattgagaaaaactctctaa-aat 1365634  T
Q  181 tttattgaat 190  Q
     |||||||||    
T  1365633 attattgaat 1365624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 5934662 - 5934611
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||||||    
T  5934662 gctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaa 5934611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 1874595 - 1874545
Alignment:
Q  82 ctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  1874595 ctaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaa 1874545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 30217871 - 30217822
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||||||||| || |||||| |||| |||||||||||||||||    
T  30217871 gctaaacctagattgaaagaa-caagttcgcaagcgacaaacttgtgaaaa 30217822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 1786747 - 1786663
Alignment:
Q  75 gcaaatgctaaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattg 161  Q
    |||| |||||||||||||| |||| | ||||||||||||| |||||||| || ||||   |||||||||| |||| || |||||||||    
T  1786747 gcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaa---atagggttccagaatccatcagaaattg 1786663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4133299 - 4133356
Alignment:
Q  75 gcaaatgctaaacctagattgaa-ataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||| ||||||||| || ||||| ||| ||| |||||||||||||||||    
T  4133299 gcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaa 4133356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 8916410 - 8916489
Alignment:
Q  83 taaacctagattgaaa-taaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||| ||| | ||||||||||||| ||| ||||||||| ||   |||| |||| ||||| |||||||||||||||    
T  8916410 taaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaa---atagagttctggaatccaccagaaattgaga 8916489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 6659449 - 6659556
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaag 239  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||| ||||||||||||||||||||    
T  6659449 ttccggaatccaccagaa-ttgagagaaaatctcgaatagttttagtgaatcaaaaagt-tgcctcttaggctacataagttctgcttatatagtgaaag 6659546  T
Q  240 aaataacaaa 249  Q
    ||||||||||    
T  6659547 aaataacaaa 6659556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 24667678 - 24667541
Alignment:
Q  117 acaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgca 215  Q
    |||||||||||||||   |||||||||||||| ||| ||||| | |||||||| ||||||||| | ||| ||||  |||| ||||| |||||||||| ||    
T  24667678 acaaacttgtgaaaa---tagggttccggaatccactagaaaat-agagaaaagtctcgaatattattaatgaaataaaa-gtgtgcctcttaggctaca 24667584  T
Q  216 taacttctgcttatatagtgaaagaaataacaaactcgtggac 258  Q
    ||| ||||||||||||| ||||||||||||||||| |||||||    
T  24667583 taagttctgcttatataatgaaagaaataacaaacccgtggac 24667541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 13085214 - 13085286
Alignment:
Q  143 cggaattcaccagaaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataa 218  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  13085214 cggaatccacca-aaattgagagaaaatctcgaataattttattgaataaaaaa--gtgtctcttaggctgcataa 13085286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 22691281 - 22691178
Alignment:
Q  140 ttccggaattcaccagaaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaa 238  Q
    ||||||||| |||||||| ||||||||||| ||| ||||| | ||| |||||  ||||||||| |||||||||| ||||| |||||||||||||||||||    
T  22691281 ttccggaatccaccagaa-ttgagagaaaagtcttgaatattattaatgaat--aaaagtgtgcctcttaggctacataagttctgcttatatagtgaaa 22691185  T
Q  239 gaaataa 245  Q
    |||||||    
T  22691184 gaaataa 22691178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 40206206 - 40206101
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgagagaaaatctcgaataat 180  Q
    |||||| ||| ||||||| | ||||||| |||| ||||||||||||||||   |||| ||| |||||||||||||||||||||| ||| |||| || |||    
T  40206206 gctaaatctaaattgaaagagacaagttcgcaagcgacaaacttgtgaaa---atagtgtttcggaattcaccagaaattgagaaaaattctctaa-aat 40206111  T
Q  181 tttattgaat 190  Q
     |||||||||    
T  40206110 attattgaat 40206101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 13086270 - 13086312
Alignment:
Q  157 aattgagagaaaatctcgaataattttattgaatcaaaaagtg 199  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  13086270 aattgagagaaaatctcgaataattttattgaattaaaaagtg 13086312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 38888023 - 38888102
Alignment:
Q  83 taaacctagattgaaa-taaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||   |||||||| |||||| ||  |||||||||||    
T  38888023 taaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaa---atagggtttcggaatccattagaaattgaga 38888102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 4053101 - 4053007
Alignment:
Q  157 aattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcg 253  Q
    ||||||||||||| ||||||||| ||||||||||| ||||   | |||||||||| ||||||| || || ||| ||| | ||||||||||||||||||    
T  4053101 aattgagagaaaagtctcgaatatttttattgaatgaaaa---gagtctcttaggttgcataagttttgtttaaatactaaaagaaataacaaactcg 4053007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 10494958 - 10494880
Alignment:
Q  84 aaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||| ||||  ||||||||||||||  ||||||| ||||||||   ||| ||||||||||||||||||||||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaa---tagagttccggaattcaccagaaattgaga 10494880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 2053156 - 2053238
Alignment:
Q  170 tctcgaataattttattgaatcaaaaagtgtgtctcttaggctgcataacttctgcttatatagtgaaagaaataacaaactcgt 254  Q
    ||||||||||||||||||||| || |||| |  |||||||||||||||| || || ||| ||| | || ||||||||||||||||    
T  2053156 tctcgaataattttattgaatgaataagtct--ctcttaggctgcataagttatgtttaaatactaaatgaaataacaaactcgt 2053238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 6659362 - 6659412
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||| |||||| ||||  ||||||||||||| |||||||||||||||||    
T  6659362 gctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaa 6659412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 9260611 - 9260550
Alignment:
Q  100 aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||| ||||||||||| ||||   |||||||| | |||| |||||||||||||||    
T  9260611 aaacaagtttgcaaacgacaaacttgcgaaa---atagggtttcagaatccaccagaaattgaga 9260550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 18689552 - 18689633
Alignment:
Q  81 gctaaacctagattgaaat-aaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||||  ||| |||||||||  |||||||||||| ||||   ||||||| | |||| |||||||||||||||    
T  18689552 gctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaa---tagggttgcagaatccaccagaaattgaga 18689633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 7634136 - 7634057
Alignment:
Q  83 taaacctagattgaaata-aacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||   ||||||||||||| ||| ||||||||| |||   ||| |||| ||||| |||||||||||||||    
T  7634136 taaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaa---tagagttctggaatccaccagaaattgaga 7634057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 1713 - 1635
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||   ||| ||||| ||||| |||||||| ||||||    
T  1713 taaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaa---atatggttctggaatccaccagaatttgaga 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 14904 - 14826
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattga 162  Q
    ||||||||| |||||||||||| ||||| |||| ||| ||||||||||||   |||||  |||||||| ||||| |||||||    
T  14904 gctaaaccttgattgaaataaataagttggcaagcgaaaaacttgtgaaa---ataggaatccggaatccaccaaaaattga 14826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 17695 - 17647
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    |||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  17695 taaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaa 17647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 37768 - 37718
Alignment:
Q  81 gctaaacctagattgaaataaacaagtttgcaaccgacaaacttgtgaaaa 131  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||    
T  37768 gctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaa 37718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 9759 - 9679
Alignment:
Q  83 taaacctagattgaaataaacaagtttgcaaccgacaaac--ttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    ||||||||||||||||  ||||||||| ||| |||| |||  |||||||||   |||||||||| ||| |||||||||||||||    
T  9759 taaacctagattgaaaagaacaagtttccaagcgactaacacttgtgaaaa---tagggttccgaaatccaccagaaattgaga 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 145792 - 145711
Alignment:
Q  81 gctaaacctagattgaaataaa-caagtttgcaaccgacaaacttgtgaaaaatatagggttccggaattcaccagaaattgaga 164  Q
    |||||||||||||||||| ||| ||||||||||| |||||| |||||   ||| |||||||||  |||| ||||| |||||||||    
T  145792 gctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgt---aaaaatagggttctagaatccaccaaaaattgaga 145711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University