View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_20 (Length: 240)
Name: NF17670_low_20
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 35664795 - 35665008
Alignment:
| Q |
19 |
gctagaaacgtggatattagaacaatgagaattaggagaaaataagataaaaaagctttgatagctcgaatgagaataaaatttataggaaatcatagtg |
118 |
Q |
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| T |
35664795 |
gctagaaacgtggctattagaacaatgagaattaggagaaaataagataaaaagactttgatagctcgaatgagaataaaatttataggaaatcatagtg |
35664894 |
T |
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| Q |
119 |
ataaaagaaatgtaagaaggagtataatgactcttttggtttcttggtgtgtacttgctactttgtgaatccttcaaccttcaccaacggattcaaatgg |
218 |
Q |
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| T |
35664895 |
ataaaagaaatgtaagaaggagtataatgactcttttggtttcttggtgtgtacttgctactttgtgaatccttcaaccttcaccaacggattcaaatgg |
35664994 |
T |
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| Q |
219 |
aaattgttcatctc |
232 |
Q |
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|||||||||||||| |
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| T |
35664995 |
aaattgttcatctc |
35665008 |
T |
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Back To:
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 18645997 - 18646058
Alignment:
| Q |
65 |
ataaaaaagctttgatagctcgaatgagaataaaatttataggaaatcatagtgataaaaga |
126 |
Q |
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|||||| |||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||| |
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| T |
18645997 |
ataaaagagctttgatagctcgaatgagagtaaaattcataaggaatcatatcgataaaaga |
18646058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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