View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_3 (Length: 434)
Name: NF17670_low_3
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 3239472 - 3239296
Alignment:
| Q |
1 |
tcaaatccaaatatctcaagttcttcccataaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaa |
100 |
Q |
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| T |
3239472 |
tcaaaaccaactgtctcaagttcttcccattaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaa |
3239373 |
T |
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| Q |
101 |
ctcggcctaatgctgtgaacgctcattctgtaaatctacgagtacgctttctcttcctctggtcgtcaacaagtgat |
177 |
Q |
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| T |
3239372 |
ctcggcctaatgctgtgaacacccattctgtaaatctacgagtacgctttctcttcctctggtcgtcaacaagtgat |
3239296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 3244069 - 3243907
Alignment:
| Q |
14 |
tctcaagttcttcccataaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaactcggcctaatgc |
113 |
Q |
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| T |
3244069 |
tctcaagttcttcccataaaatttggagatgattacaagcttcttcattcatatctttcacccttttggtgtttagaaaatgtagaactcgacctaatgc |
3243970 |
T |
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| Q |
114 |
tgtgaacgctcattctgtaaatctacgagtacgctttctcttcctctggtcgtcaacaagtga |
176 |
Q |
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| T |
3243969 |
tgtgaatgcccattctgtaaacctaagagtatgctttctcttcctctggttttcaacacgtga |
3243907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 3243571 - 3243501
Alignment:
| Q |
336 |
catccaaatgtacgaacttgtcgacactccaataataattactttctttgaactcctgttcggtttctgat |
406 |
Q |
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| T |
3243571 |
catccaaatgtatgaacttgtcgacactccagcaataattacttgcattgagctcctgttcagtttctgat |
3243501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 3243730 - 3243671
Alignment:
| Q |
182 |
aagagatttccttgacaaaaattggttgtgctggtgaactatccacctcgctaacttcttgat |
244 |
Q |
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| T |
3243730 |
aagagatttccttgacagaaattggttgcgctggtga---atccatcttgctaacttcttgat |
3243671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 43709494 - 43709621
Alignment:
| Q |
1 |
tcaaatccaaatatctcaagttcttcccataaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||| || ||||| | |||||||| |||||| ||||| |||| || || ||||| |||| |
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| T |
43709494 |
tcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaa |
43709593 |
T |
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| Q |
101 |
ctcggcctaatgctgtgaacgctcattc |
128 |
Q |
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||| ||| || || ||||| || ||||| |
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| T |
43709594 |
ctctgcccaaagcggtgaaagcccattc |
43709621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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