View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_5 (Length: 422)
Name: NF17670_low_5
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 13435247 - 13435588
Alignment:
| Q |
19 |
aaacatgattgttaactacacactcacaacaacaattcttcaatcgagtgaaagtctttctctctcgatgaaattacccttctttatcttcaacacaaat |
118 |
Q |
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| T |
13435247 |
aaacatgattgttaactacacactcacaacaacaattcttcaatcgagtgaaagtcttttcctctggataaaattacccttctttatcttcaacacaaat |
13435346 |
T |
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| Q |
119 |
ctggaaaaa-ttacaccgtccacacaccatc-----------cacaacctcttctatcaccaacatcatccatctctcaatcgaattgacaacaacttcc |
206 |
Q |
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| T |
13435347 |
ctggaaaaaattacacggtccacacaccatcaacaacctcaccacaacctcttccatcaccaacatcatccatctctcaatcgaattgacaacaacttcc |
13435446 |
T |
|
| Q |
207 |
tatgaaactgaagaactcataattcatcactcaattaaagaacccaaagcacacaacaacatcaacaacttccctgatgaatatgagtttgcaaggttat |
306 |
Q |
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| T |
13435447 |
tatgaatctgaagaactcataattcatcactcaattgaagaacccaaagcacacaacaa---caacaacttccctaatgaatatgagtttgcaaggttat |
13435543 |
T |
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| Q |
307 |
attttgttttgattttgaggtgtgtttagttcaattttgtaactc |
351 |
Q |
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| T |
13435544 |
attttgtttcgattttgaggtgtgtttagttcaattttgtaactc |
13435588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 13435617 - 13435650
Alignment:
| Q |
379 |
ttcctatgaaattgaagaaccccaacttcctatg |
412 |
Q |
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| T |
13435617 |
ttcctatgatattgaagaaccccaacttcctatg |
13435650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 31035087 - 31034741
Alignment:
| Q |
19 |
aaacatgattgttaactacacactcacaacaacaat---tcttcaatcgagtgaaagtctttctctctc--gatgaaattacccttctttatcttcaaca |
113 |
Q |
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| T |
31035087 |
aaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctttctctctccggatgaaattacccttctttatcttcaaca |
31034988 |
T |
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| Q |
114 |
caaatctggaaaaattacaccgtccacacaccatccacaacctc------------ttctatcacca-acatcatccatctctcaatcgaatt---gaca |
197 |
Q |
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| T |
31034987 |
caaatatgaaaaaattacacggtccacacaccatcaacaacctcaccacaacctctttccatcaccatacatcatccatctctcaatcgaactcacaaca |
31034888 |
T |
|
| Q |
198 |
acaacttcctatgaaactgaagaactcataattcatcactcaa-ttaaagaacccaaagcacacaacaacatcaacaacttccctgatgaatatgagttt |
296 |
Q |
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|||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| | | ||||||| |||||||| ||| |||||| | ||||| |
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| T |
31034887 |
acaacttcctctgaaattgaagaacccataattcatcactcaatttgaagaaccaagaacacacaa------caacaactacccaaatgaatctaagttt |
31034794 |
T |
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| Q |
297 |
gcaaggttatattttgttttgattttgaggtgtgtttagttcaattttgtaac |
349 |
Q |
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| T |
31034793 |
gcaagtttatattttgtttcgattttgaggtttgtttagttcaattttgtaac |
31034741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 31028125 - 31027984
Alignment:
| Q |
19 |
aaacatgattgttaactacacactcacaacaacaat---tcttcaatcgagtgaaagtctttctctctcgatgaaattacccttctttatcttcaacaca |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
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| T |
31028125 |
aaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctttctctccggatgaaattacaattctttatcttcaacaca |
31028026 |
T |
|
| Q |
116 |
aatctggaaaaattacaccgtccacacaccatccacaacctc |
157 |
Q |
| |
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| T |
31028025 |
aatatggaaaaattacgtggtccacacaccatcaacaacctc |
31027984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 225 - 351
Target Start/End: Complemental strand, 31027960 - 31027839
Alignment:
| Q |
225 |
ataattcatcactcaatta-aagaacccaaagcacacaacaacatcaacaacttccctgatgaatatgagtttgcaaggttatattttgttttgattttg |
323 |
Q |
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|||||||||||||||||| ||||||||| | |||||||||||| |||| ||| |||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
31027960 |
ataattcatcactcaatttgaagaacccagaacacacaacaacaacaac------cctaatgaatctgagtttgcaagtttatattttgtttcgattttg |
31027867 |
T |
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| Q |
324 |
aggtgtgtttagttcaattttgtaactc |
351 |
Q |
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| T |
31027866 |
acgtgtgtttagttcaattttgtaactc |
31027839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 31027819 - 31027747
Alignment:
| Q |
195 |
acaacaacttcctatgaaactgaagaactcataattcatcactcaattaaagaacccaaagcacacaacaaca |
267 |
Q |
| |
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||||||||||| ||||||| |||||||| || || |||| |||||||||||||| |||| ||| |||||||| |
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| T |
31027819 |
acaacaacttcatatgaaattgaagaacccagaacccatctctcaattaaagaacacaaaacactcaacaaca |
31027747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 31034720 - 31034648
Alignment:
| Q |
195 |
acaacaacttcctatgaaactgaagaactcataattcatcactcaattaaagaacccaaagcacacaacaaca |
267 |
Q |
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||||||||||| ||||||| |||||||| || || |||| |||||||||||||| |||| || |||||||| |
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| T |
31034720 |
acaacaacttcatatgaaattgaagaacccaaaacccatctctcaattaaagaacacaaaatactcaacaaca |
31034648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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