View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_6 (Length: 399)
Name: NF17670_low_6
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_6 |
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| [»] chr7 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 43709933 - 43709535
Alignment:
| Q |
1 |
ggtaacttaatggcttcactattatctaactccataacatatggtagtcatattagtggtggacatatggaagtcccaaggcctgaagcccaagtcccaa |
100 |
Q |
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| T |
43709933 |
ggtaacttaatggcttcactattatctaactccataacatatggtagtcatattagtggtggacatatggaagtcccaaggcctgaagcccaagtcccaa |
43709834 |
T |
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| Q |
101 |
atctggaatctctttccgaatttcctatattagtttgtactgagcctacaagagacattgacatggaatttttcaaatactcaattggtgagcttatgga |
200 |
Q |
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| T |
43709833 |
atctggaatctctttccgaatttcctatattagttcgtactgagcctacaagagacattgacatggaatttttcaaatactcaattggtgagcttatgga |
43709734 |
T |
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| Q |
201 |
tttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctcaacatccttcactcattgagtgtcagcagaggagaagt |
300 |
Q |
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| T |
43709733 |
tttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctcaacatccttcactcattgagtgtcagcagaggagaagt |
43709634 |
T |
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| Q |
301 |
cgcaggttcactgaatgggctttcaccgctttgggcagagttctttatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgcaaggat |
399 |
Q |
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| T |
43709633 |
cgcaggttcactgaatgggctttcaccgctttgggcagagttctttatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgcaaggat |
43709535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 43691345 - 43691275
Alignment:
| Q |
313 |
gaatgggctttcaccgctttgggcagagttctttatttccttaagactagaaaggcgaaagacatgaatga |
383 |
Q |
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| T |
43691345 |
gaatgggcgttcactgctttgggcagagttctttatttccttaagactagaaaagggaaagatatgaatga |
43691275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 43696518 - 43696432
Alignment:
| Q |
313 |
gaatgggctttcaccgctttgggcagagttctttatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgcaaggat |
399 |
Q |
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| T |
43696518 |
gaatgggcgttcaaccctttgggcagagttctttatttccttaagactaggaaggtgaaatatatgaatgatttagcttgtaaggat |
43696432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 43695747 - 43695642
Alignment:
| Q |
294 |
gagaagtcgcaggttcactgaatgggctttcaccgctttgggcagagttctttatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgc |
393 |
Q |
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||||||||||| ||| ||||| | ||| ||| | || ||||| |||||| |||||||||||||||||||||| | || |||||||||||| || ||||| |
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| T |
43695747 |
gagaagtcgcaagtttactgatttggcattcgctgcattggggagagttatttatttccttaagactagaaaagtgagagacatgaatgaccaggcttgt |
43695648 |
T |
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| Q |
394 |
aaggat |
399 |
Q |
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|||||| |
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| T |
43695647 |
aaggat |
43695642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 43696628 - 43696555
Alignment:
| Q |
190 |
gagcttatggatttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctca |
263 |
Q |
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| T |
43696628 |
gagcttatggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctca |
43696555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 41126737 - 41126645
Alignment:
| Q |
183 |
aattggtgagcttatggatttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctcaacatccttcact |
275 |
Q |
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| T |
41126737 |
aattggtgtgcttatggatttcaagggtttaggacaagtggataaagcttttgttccgctactagaggaagcatgctctcatcatccttcact |
41126645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 41126520 - 41126605
Alignment:
| Q |
183 |
aattggtgagcttatggatttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctcaacatc |
268 |
Q |
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| T |
41126520 |
aattggtgtgcttatggatttcaagggtttaggacaagtggaaaaagcttttgttctgctactagaggaagcatgctctcatcatc |
41126605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 41126506 - 41126455
Alignment:
| Q |
346 |
tatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgcaagg |
397 |
Q |
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| T |
41126506 |
tatttccttaagacaggaaaggcgaaagatatgaatgagcaagcttgtaagg |
41126455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 15827206 - 15827266
Alignment:
| Q |
339 |
agttctttatttccttaagactagaaaggcgaaagacatgaatgatcaagcttgcaaggat |
399 |
Q |
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|||||| |||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
15827206 |
agttctgtatttccttaagactagaaaagcgagagacatgaatgaacaagcttgtaaggat |
15827266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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