View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17670_low_9 (Length: 313)
Name: NF17670_low_9
Description: NF17670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17670_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 27871291 - 27871575
Alignment:
| Q |
10 |
ataatactgaataaataaatttcttnnnnnnnntattaaataaatacattaagtactcaatgaatttaataaatgttttttcttataactatgattgggt |
109 |
Q |
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| T |
27871291 |
ataatactgaataaataaatttcttaaaaaaaatattaaataaataaattaagtactcaatgaatctaataaatgttttttcttataactatgattgggt |
27871390 |
T |
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| Q |
110 |
ggagtcccaattaagaaaattgtttaaatataaaaagaaagaaagaataatattttaactaaaacatctttactatgaatttgtatatttataggtatca |
209 |
Q |
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| T |
27871391 |
ggagtcctaattaagaaaaatgtataaatataaaaagaaagaaagaataatattttaactaaaacatctttactatgaatttgtatatttataggtatca |
27871490 |
T |
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| Q |
210 |
taagtaaagttgaagatattgaatcgtaagaaatacaaatcttattaattagagggtacactcaaaagaagaagaaaaagtgatt |
294 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27871491 |
taagtaaagttgaagatattgaattgtaagaaatacaaatattatttattagagggtacactcaaaagaagaagaaaaagtgatt |
27871575 |
T |
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