View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17671_high_2 (Length: 361)
Name: NF17671_high_2
Description: NF17671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17671_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 21120265 - 21119927
Alignment:
| Q |
11 |
tagcatagatattgcacgctgtaatacgacattcactagtaatacacataaaccaaccaaaattctattccacaggt---aaatttataagcaactagcc |
107 |
Q |
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| T |
21120265 |
tagcatagatattgcacgctgtaatacgacattctctagtaatacacataaaccaaccacaattctattccacaggttcaaaatttataagcaactagcc |
21120166 |
T |
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| Q |
108 |
acattttaattcaatacaaacaaacaaaaatgatgatccttataccagaattacaacacatttttatgttcaaatataaatatagataaaaatgaacatt |
207 |
Q |
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| T |
21120165 |
acattttaattcaatacaaacaaacaaaaatgatgatccttataccagaattacagcacatttttatgttcaaatataaatatagagaaaaatgaacatt |
21120066 |
T |
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| Q |
208 |
tatatttgcacggttttacattgatacagctgattgggttgagagcatagagaaacttcatcgtcttattatgctgcttgcttcttctagtttcaacctt |
307 |
Q |
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| T |
21120065 |
tatatttgcagggttttacattgatacagttgattgggttgagaacatagagaaacttcaccatcttattatgctgcttgcttcttctagtttcaacctt |
21119966 |
T |
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| Q |
308 |
ttcaacaacaaattcaaaatttcagtcagtagaggaatt |
346 |
Q |
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| T |
21119965 |
ttcaacaacaaattcaaaatttcagtcagtagaggaatt |
21119927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 163 - 344
Target Start/End: Complemental strand, 21127382 - 21127210
Alignment:
| Q |
163 |
acacatttttatgttcaaatataaatatagataaaaatgaacatttatatttgcacggttttacattgatacagctgattgggttgagagcatagagaaa |
262 |
Q |
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| T |
21127382 |
acacatttttatgttgaaatataaagatagagaaaaatgaacatttatatttgcactgttttacattgatacagctgattgggttgagagcatagagaaa |
21127283 |
T |
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| Q |
263 |
cttcatcgtcttattatgctgcttgcttcttctagtttcaaccttttcaacaacaaattcaaaatttcagtcagtagaggaa |
344 |
Q |
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| T |
21127282 |
cttcatcatcttattatgctgcttgcttcttctagttt---------caacaacaaattcaaaatttcagtcagtagaggaa |
21127210 |
T |
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