View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17671_high_3 (Length: 358)
Name: NF17671_high_3
Description: NF17671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17671_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 33165784 - 33165452
Alignment:
| Q |
7 |
tgtcgaagaatattttactcatgtcctatttttagttgcctgttattcttttcnnnnnnnaagaaaatctggatgtcctgttttgaaaacagaaaaataa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33165784 |
tgtcaaagaatattttactcatgtcctatttttggttgcctgttattcttttctttttttaagaaaatctggatgtcctgttttgaaaacagaaaaataa |
33165685 |
T |
|
| Q |
107 |
tctcgctaacatgaatacctgatcagagattactaccaagatgtattttgatccactcatgtggtgtgctatttcaggtcacagacatttcattttctaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33165684 |
tctcgctaacatgaatacctgatcagagattactaccaagatgtattttgatccactcatgtggtgtgctatttcaggtcacagacatttcattttctaa |
33165585 |
T |
|
| Q |
207 |
atattcttggaggaaaacatagataaccatttcctttagaaaatcagtataattttagtttattcttctataaccgtggaaagggtgcttgattacatgc |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33165584 |
atattcttggaagaaaacatagataaccatttcctttagaaaatcagtataattttagtttattcttctataaccgtggaaagggtgcttgattacatgc |
33165485 |
T |
|
| Q |
307 |
aagctgtcatcacatgtagaactaggctaaact |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
33165484 |
aagctgtcatcacatgtagaactagactaaact |
33165452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University