View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17671_high_4 (Length: 351)
Name: NF17671_high_4
Description: NF17671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17671_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 26236 - 25902
Alignment:
| Q |
17 |
tgaaggagtttccagaaaacttggcataattggtttttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcact |
116 |
Q |
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| T |
26236 |
tgaaggagtttccagaaaacttggcataattggtttttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcact |
26137 |
T |
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| Q |
117 |
ggaatctccttttatggtacaaggatagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctg |
216 |
Q |
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| T |
26136 |
ggaatctccttttatggtacaaggatagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctg |
26037 |
T |
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| Q |
217 |
taagtgaaataaaaaatattcagactacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgt |
316 |
Q |
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| T |
26036 |
taagtgaaataaaaaatattcagactacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgt |
25937 |
T |
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| Q |
317 |
ggaagaagacaaggatgctgaacaagcctacgtaa |
351 |
Q |
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| T |
25936 |
ggaagaagacaaggatgctgaacaagcctacgtaa |
25902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 21352716 - 21352590
Alignment:
| Q |
17 |
tgaaggagtttccagaaaacttggcataattggtttttgctttggaggaggcaaagtgttagaggtcctagcccaagaccaagatgcttgcttcggcact |
116 |
Q |
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||||||||||| || |||||||||| |||||||||||||||||||| | ||||||| |||||||| |||| |||||||||||||||||| || |||| | |
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| T |
21352716 |
tgaaggagttttcaaaaaacttggcgtaattggtttttgctttggacgcagcaaagtattagaggtgctaggccaagaccaagatgcttgttttggcatt |
21352617 |
T |
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| Q |
117 |
ggaatctccttttatggtacaaggata |
143 |
Q |
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| T |
21352616 |
ggactctccttttttggtacaaggata |
21352590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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