View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17671_low_1 (Length: 499)
Name: NF17671_low_1
Description: NF17671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17671_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Complemental strand, 42410299 - 42409839
Alignment:
| Q |
14 |
agacaaatacaagaactgtagtacactgtttataataacaactgagctagttgtttgttgttatagatcgaatggtatccacaaactaattacaatgtca |
113 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410299 |
agacaaatacaagtactgtagtacactgtttataataacaactgagctagttgtt----gttatagatcgaatggtatccacaaactaattacaatgtca |
42410204 |
T |
|
| Q |
114 |
acatgcatgctttaagccattattattttgtgtccatgactctacagccacacataaacacttggtaagaacactcactgtccccactaactcgtgttct |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410203 |
acatgcatgctttaa-------ttattttgtgtccatgactctacagccacacataaacacttggtaagaacactcactgtccccactaactcgtgttct |
42410111 |
T |
|
| Q |
214 |
tttcattaccgtaaccaaacctttaacctcatccactcactcccttcaaatcttttattatttcatattttatttttctcttggtccttattatttcatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410110 |
tttcattaccgtaaccaaacctttaacctcatccactcactcccttcaaatcttttattatttcatattttatttttctcttggtccttattatttcatc |
42410011 |
T |
|
| Q |
314 |
aatacttataatacaagataccctaaatattatacaatacaaacaacattgtctatttttggcttaaaacacttcttgtctgataaagagtatccattac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410010 |
aatacttataatacaagataccctaaatattatacaatacaaacaacattgtctatttttggcttaaaacacttcttgtctgataaagagtatccattac |
42409911 |
T |
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| Q |
414 |
cattacttgagttgatannnnnnncttaaagtttcattaggaattaagagagttaagtaaacatgaaaattc |
485 |
Q |
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| T |
42409910 |
cattacttgagttgatatttttttcttaaagtttcattaggaattaagagagttaagtaaacatgaaaattc |
42409839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 34456192 - 34456139
Alignment:
| Q |
164 |
cacataaacacttggtaagaa-cactcactgtccccactaactcgtgttctttt |
216 |
Q |
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|||| |||||||||||| ||| |||| ||||||||||||||||| ||||||||| |
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| T |
34456192 |
cacacaaacacttggtaggaaacacttactgtccccactaactcttgttctttt |
34456139 |
T |
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