View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_1 (Length: 666)
Name: NF17672_high_1
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 36 - 650
Target Start/End: Complemental strand, 34604753 - 34604137
Alignment:
| Q |
36 |
acaatgtaaatgagttttttattggctgtatgtataaactaatctactataaataagactagagagttccgaacctctccatttttaaaaataaatggca |
135 |
Q |
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| T |
34604753 |
acaatgtaaatgagttttttattggctgtatgtatgaactaatctactataaataagactagagagttctgaacctctccattttttaaaataaatggtg |
34604654 |
T |
|
| Q |
136 |
atatctattactattgttttgttgtataaatgtttaatttggataaagaatgaagtagcgactagcgagagttctaaactttgttgatgtaaatgtaaaa |
235 |
Q |
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| T |
34604653 |
atatctattactattgttttgttgtataaatgtttaatttggataaagaatgaagtagcaactagcgagagttctaaactttgttgatgtaaatgtgaaa |
34604554 |
T |
|
| Q |
236 |
accacgaccaatttatggttgttacatttgaacgagaatatgacattctataattgtaatgaaagtaaagatttggggggcatttgttgagggacaaatt |
335 |
Q |
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| T |
34604553 |
atcacgaccaatttatggttgttacatttgaacgagaatatgacattctataattgtaatgaaagtaaagatttggggggcatttgttgagggacaaatt |
34604454 |
T |
|
| Q |
336 |
taatttgtatt-ttttatagatggaaatgcagaaattatagcaaatgttaaaatgctacaaaaagaggattatggaattagaaaaataaatgaaagaatt |
434 |
Q |
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| T |
34604453 |
taatttgtatttttttatagatggaaatgcagaaattatagcaaatgttaaaatgctacaaaaagaggattatggatttagaaaaataaatgaaagaact |
34604354 |
T |
|
| Q |
435 |
aaagtcctactcgacatagagcaaaacgcacgtcgaagacaaatacacaatccttcaacaag-atgtagtgttgaaagacataaattaggctgatacaat |
533 |
Q |
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| T |
34604353 |
aaagtcctactcgacatagagcaaaacgcatgtcgaagacaaatacgcaatccttcaacaagaatgtagtgttgaaagacataaattagactgatacaat |
34604254 |
T |
|
| Q |
534 |
cgtggatgacactgcaataagggttgcttaatatattcagaaatcacatctacattattataacgattgtcaattctttgttcacatgttattatgtact |
633 |
Q |
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| T |
34604253 |
cgtggatgacactgcaataagggttgcttaatatattcagaaatcacatctacattattataacgattgtcaattctttgttcacatgttattatgtact |
34604154 |
T |
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| Q |
634 |
tttcttgtcaaatttac |
650 |
Q |
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| T |
34604153 |
tttcttgtcaaatttac |
34604137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 14122842 - 14122782
Alignment:
| Q |
113 |
tccatttttaaaaataaatggcaatatctattactattgttttgttgtataaatgtttaatt |
174 |
Q |
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| T |
14122842 |
tccatttcttaaaataaatgacaatatc-attactataattttgttgtataagtgtttaatt |
14122782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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