View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_13 (Length: 268)
Name: NF17672_high_13
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32615030 - 32615261
Alignment:
| Q |
1 |
tgacactaatggtcattttcaaccggctcactgacataaattgaacnnnnnnnncttgaggttacaagattaaactcttacgtgtgagctgacatctcat |
100 |
Q |
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| T |
32615030 |
tgacactaatggccgttttcaactggctcactgacagaaattgaacttcttct-cttaaagttacaagattaaactcttacgcgtgagctgacacctcat |
32615128 |
T |
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| Q |
101 |
ggagaaattgatcatattttatcttaagaaaggatgttttatgacaatagttatccctctttaaagaggaatcattattaattaaatgacactaatggcc |
200 |
Q |
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| T |
32615129 |
ggagaaattgatcttattttatcttaagaaat-atggtttatgacaatagttatccctctttaaggaggaattattattaattaaatgacactaatggcc |
32615227 |
T |
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| Q |
201 |
attttcaactggatcaccgagagaaattgaactt |
234 |
Q |
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| T |
32615228 |
attttcaactggctcactgagagaaattgaactt |
32615261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 32615001 - 32615108
Alignment:
| Q |
158 |
tctttaaagaggaatcattattaattaaatgacactaatggccattttcaactggatcaccgagagaaattgaacttcttctcttgagattacaagacca |
257 |
Q |
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||||||| ||| ||| |||||||| ||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||| | |||||||| | |
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| T |
32615001 |
tctttaaggagaaattgttattaatcaaatgacactaatggccgttttcaactggctcactgacagaaattgaacttcttctcttaaagttacaagatta |
32615100 |
T |
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| Q |
258 |
aactctta |
265 |
Q |
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|||||||| |
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| T |
32615101 |
aactctta |
32615108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 32615296 - 32615368
Alignment:
| Q |
55 |
cttgaggttacaagattaaactcttacgtgtgagctgacatctcatggagaaattgatcatattttatcttaa |
127 |
Q |
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| T |
32615296 |
cttgaggttacaagatcaaactcttacgtttaagctgtcaccttatggagaaattgattttattttatcttaa |
32615368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 32615276 - 32615321
Alignment:
| Q |
220 |
agagaaattgaacttcttctcttgagattacaagaccaaactctta |
265 |
Q |
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| T |
32615276 |
agagaaattgaacttcttctcttgaggttacaagatcaaactctta |
32615321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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