View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_15 (Length: 243)
Name: NF17672_high_15
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 43493107 - 43492885
Alignment:
| Q |
18 |
attacagtataagaaattagatgtcagcgtcaggagtgagcgagcgggactctcgttcaccaacacagacataccgctgccagaaatacacacacaatac |
117 |
Q |
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| T |
43493107 |
attacagtataagaaattagatgtcagtgtcaggagtgagcgagtgggactctatttcaccaacacagacatac---tgccagaaatacacacacaatac |
43493011 |
T |
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| Q |
118 |
catctaagaatcaaatgtgatgtgcctaaatagagtacaagtgtacgtatgagctatagataaaaccgaacgggtgacctatttatagtaaccatcggtc |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
43493010 |
catctaagaatcaaatgtgctgtgcctaaatagagtacgagtgtacgtatgagctatagataaaaccgaacgggtgacctatttatagtaagcatcagtc |
43492911 |
T |
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| Q |
218 |
caacatttttcttatagctatctaat |
243 |
Q |
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|| |||||| |||||||||||||||| |
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| T |
43492910 |
cagcattttgcttatagctatctaat |
43492885 |
T |
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