View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17672_high_17 (Length: 227)
Name: NF17672_high_17
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_17 |
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| [»] scaffold0164 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 16126 - 15913
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16126 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
16027 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggca-tttctttttctgtgataacaatgaatggcatatggca |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
16026 |
tcaattggagtaac-ttatatgaaggaatgacgatagtgccagaaatgcatgttaaatggcattttttttttctgtgataacaatgaatggcatatggca |
15928 |
T |
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| Q |
213 |
ttgtcatatactcat |
227 |
Q |
| |
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||||||||||||||| |
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| T |
15927 |
ttgtcatatactcat |
15913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 8232 - 8032
Alignment:
| Q |
27 |
tggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgcatcaattggagtaa |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8232 |
tggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgcatcaattggagtaa |
8133 |
T |
|
| Q |
127 |
ctttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggca-tttctttttctgtgataacaatgaatggcatatggcattgtcatatactc |
225 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8132 |
c-ttatatgaaggaatgacgatagtgccagaaatgcatgttaaatggcattttttttttctgtgataacaatgaatggcatatggcattgtcatatactc |
8034 |
T |
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| Q |
226 |
at |
227 |
Q |
| |
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|| |
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|
| T |
8033 |
at |
8032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 24071666 - 24071453
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24071666 |
cctctttgctttatggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtgcaaattataagaagatgca |
24071567 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggca-tttctttttctgtgataacaatgaatggcatatggca |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
24071566 |
tcaattggagtaac-ttatatgaaggaatgacgatagtgccagaaatgcatgttaaatggcattttttttttctgtgataacaatgaatggcatatggca |
24071468 |
T |
|
| Q |
213 |
ttgtcatatactcat |
227 |
Q |
| |
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||||||||||||||| |
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| T |
24071467 |
ttgtcatatactcat |
24071453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 44483870 - 44484084
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
44483870 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgatcgataatcaaaagtgcaaattataagaagatgca |
44483969 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggcat-ttctttttctgtgataacaatgaatggcata-tggc |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||| ||||| || | |
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| T |
44483970 |
tcaattggagtaac-ttatatgaaggaatgacgatagtgccagaaatgcatgttaaatgtcatgttttttttctgtgataacaatgaattgcatattgac |
44484068 |
T |
|
| Q |
212 |
attgtcatatactcat |
227 |
Q |
| |
|
|||||||||||||||| |
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| T |
44484069 |
attgtcatatactcat |
44484084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 12316685 - 12316900
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
12316685 |
cctctttgctttctggattattaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtgcaaattataaaaagatgca |
12316784 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggca--tttctttttctgtgataacaatgaatggcata-tgg |
210 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||| |
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| T |
12316785 |
tcaattggagtaac-ttatatgaaggaatgatgatagtgccagaaatgcatgttaaatggcatgtttttttttatgtgataacaatgaatgacatattgg |
12316883 |
T |
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| Q |
211 |
cattgtcatatactcat |
227 |
Q |
| |
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||||||||||||||||| |
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| T |
12316884 |
cattgtcatatactcat |
12316900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 18565549 - 18565352
Alignment:
| Q |
37 |
atttgagggcatctacaaactgaaaaagatacaaaatagtgattgataat-caaaagtggaaattataagaagatgcatcaattggagtaactttatatg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18565549 |
atttgagggcatctacaaactgaaaaagatacaaaatagtgattgataataaaaaaatgcaaattataagaagatgcatcaattggagtaac-ttatatg |
18565451 |
T |
|
| Q |
136 |
aaggaatgacgatagtgtcagaaatgcatgttaaatggca------tttctttttctgtgataacaatgaatggcata-tggcattgtcatatactcat |
227 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
18565450 |
aaggaatgacgatagtgccagaaatgcatgttaaatgacatgtttttttcttcttttgtgataacaatgaatggcatattggcattgtcatatactcat |
18565352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 18808775 - 18808555
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
18808775 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaattgtgattgataatcaaaagtgcaaattataagaagatgca |
18808676 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggcattt-------ctttttctgtgataacaatgaatggcat |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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|
| T |
18808675 |
tcaattggagtaac-ttatatgaaggaatgacaatagtgccagaaatgcatgttaaatgacatttttttttcttttttctgtgatgacaatgaatggcat |
18808577 |
T |
|
| Q |
207 |
a-tggcattgtcatatactcat |
227 |
Q |
| |
|
| |||||||||||||||||||| |
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| T |
18808576 |
attggcattgtcatatactcat |
18808555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 19833261 - 19833052
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
19833261 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtgcaaattataagaagatgca |
19833162 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggca----tttctttttctgtgataacaatgaatggcata-t |
208 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||||||||||||||| ||| ||| || |||| |||||||||||||||||||| | |
|
|
| T |
19833161 |
tcaattggagtaac-ttat--------atgacgatagtgccagaaatgcatgttaaattgcatgttttttttcttctatgataacaatgaatggcatatt |
19833071 |
T |
|
| Q |
209 |
ggcattgtcatatactcat |
227 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
19833070 |
ggcattgtcataaactcat |
19833052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 44197479 - 44197308
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| |||||||||||||||||| |
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|
| T |
44197479 |
cctctttgctttctggattgttaatttgagggcatctacaatctgaaaaagatacaaaatagtgactggtaatcagaagtgcaaattataagaagatgca |
44197380 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggcatttctttttct |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||| | ||||||| |
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|
| T |
44197379 |
tcaattggagtaac-ttatatgaaggaatgacaatagtgccagaaatgcaagttaaatggcatgtttttttct |
44197308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 19191316 - 19191157
Alignment:
| Q |
14 |
cctctttgctttctggattgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgattgataatcaaaagtggaaattataagaagatgca |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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|
| T |
19191316 |
cctctttgctttctggatcgttaatttgagggcatctacaaactgaaaaagatacaaaatagtgactggtaatcaaaagtgcaaattataagaagatgca |
19191217 |
T |
|
| Q |
114 |
tcaattggagtaactttatatgaaggaatgacgatagtgtcagaaatgcatgttaaatggcat |
176 |
Q |
| |
|
|||||| |||||| || |||||||||| ||| ||||||| ||||||||| |||||||||||| |
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|
| T |
19191216 |
tcaattaaagtaac-ttgtatgaaggaa-gacaatagtgt-agaaatgcaagttaaatggcat |
19191157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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