View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_2 (Length: 656)
Name: NF17672_high_2
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 20 - 656
Target Start/End: Complemental strand, 28094821 - 28094185
Alignment:
| Q |
20 |
gtcataaaagacataaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094821 |
gtcataaaagacataaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcg |
28094722 |
T |
|
| Q |
120 |
acaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatgataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28094721 |
acaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatgataatgtttttgataagactattgcagaggtgctaccaaaaagagttatatg |
28094622 |
T |
|
| Q |
220 |
cgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccatta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094621 |
cgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccatta |
28094522 |
T |
|
| Q |
320 |
acaaagtttgagagtaatatgaagtatttgagccagcaggaacatgttgtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctg |
419 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094521 |
acaaagtttgagagtaatatgaagtatttgagccaacaggaacatgttgtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctg |
28094422 |
T |
|
| Q |
420 |
ataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagtt |
519 |
Q |
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| T |
28094421 |
ataaccctgttttatgcgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagtt |
28094322 |
T |
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| Q |
520 |
gcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaatcaattattat |
619 |
Q |
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| T |
28094321 |
gcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaatcaattattat |
28094222 |
T |
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| Q |
620 |
gtattgtgtttgattgtttgtgtatatataagcaaca |
656 |
Q |
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| T |
28094221 |
gtattgtgtttgattgtttgtgtatatataagcaaca |
28094185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 68 - 609
Target Start/End: Original strand, 26155984 - 26156525
Alignment:
| Q |
68 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
167 |
Q |
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||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
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| T |
26155984 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26156083 |
T |
|
| Q |
168 |
ataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtct |
267 |
Q |
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|| ||||||||| || || ||| ||||| || |||| || || ||||||||||||||||||||||| || ||| |||| || || ||| |||| ||| |
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| T |
26156084 |
atcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagcagggagttctct |
26156183 |
T |
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| Q |
268 |
ttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgtt |
367 |
Q |
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| T |
26156184 |
gtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttgatgggaatttaaagcatttgagtgagcaaccaccggtt |
26156283 |
T |
|
| Q |
368 |
gtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagat |
467 |
Q |
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| ||| || ||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||| |
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| T |
26156284 |
gcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggat |
26156383 |
T |
|
| Q |
468 |
atgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatg |
567 |
Q |
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|||| || |||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || ||||||||||||||||| |
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| T |
26156384 |
atgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatg |
26156483 |
T |
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| Q |
568 |
tgttggactcacccatgcaagggttgagggtaaagcatgaat |
609 |
Q |
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| T |
26156484 |
tgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26156525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 68 - 609
Target Start/End: Original strand, 26169282 - 26169823
Alignment:
| Q |
68 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
167 |
Q |
| |
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||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
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| T |
26169282 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26169381 |
T |
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| Q |
168 |
ataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggcaaagagtagtct |
267 |
Q |
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|| ||||||||| || || ||| ||||| || |||| || || ||||||||||||||||||||||| || ||| |||| || || ||| |||| ||| |
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| T |
26169382 |
atcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagcagggagttctct |
26169481 |
T |
|
| Q |
268 |
ttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccagcaggaacatgtt |
367 |
Q |
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| T |
26169482 |
gtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttgatgggaatttaaagcatttgagtgagcaaccaccggtt |
26169581 |
T |
|
| Q |
368 |
gtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagat |
467 |
Q |
| |
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| ||| || ||||| |||||||| || |||||||| ||||| || || | |||||||||||||| |||||||||||||| || |||||||||| ||| |
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| T |
26169582 |
gcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggat |
26169681 |
T |
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| Q |
468 |
atgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatg |
567 |
Q |
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|||| || |||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| || |||||||| || ||||||||||||||||| |
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| T |
26169682 |
atgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccaccgattttattgatgaggattttgttgatgcatg |
26169781 |
T |
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| Q |
568 |
tgttggactcacccatgcaagggttgagggtaaagcatgaat |
609 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||| ||||| |
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| T |
26169782 |
tgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26169823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 603
Target Start/End: Complemental strand, 55164595 - 55164544
Alignment:
| Q |
552 |
attttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagc |
603 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
55164595 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagc |
55164544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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