View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17672_high_4 (Length: 615)
Name: NF17672_high_4
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Complemental strand, 37030828 - 37030244
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030828 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
37030729 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030728 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
37030629 |
T |
|
| Q |
211 |
tagtccatgcaaatatatataacttgattcattttttatttgc--tgaaattaaataattaatagctgttgataggaaaataaattacaataatttaagt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | | ||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37030628 |
tagtccatgcaaatatatataacttgattcattttttata-gcaataagattaatatattaatagctgttgataggaaaataaattaatataatttaagt |
37030530 |
T |
|
| Q |
309 |
ttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaagg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030529 |
ttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaagg |
37030430 |
T |
|
| Q |
409 |
cagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagaggg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030429 |
cagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagaggg |
37030330 |
T |
|
| Q |
509 |
aattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030329 |
aattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
37030244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 325 - 594
Target Start/End: Original strand, 32593227 - 32593496
Alignment:
| Q |
325 |
tttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcaca |
424 |
Q |
| |
|
|||||||||| ||||| ||||| || |||||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593227 |
tttggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagaggcagaagcaca |
32593326 |
T |
|
| Q |
425 |
gaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttgga |
524 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |||| |
|
|
| T |
32593327 |
gaaagcattggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacacttggg |
32593426 |
T |
|
| Q |
525 |
caagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
32593427 |
aatgctcaaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggatt |
32593496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 342 - 594
Target Start/End: Complemental strand, 51824047 - 51823795
Alignment:
| Q |
342 |
caagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatcggcagatg |
441 |
Q |
| |
|
||||| || |||||||| | ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51824047 |
caagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgagaagaaggcagaggcagaagcacagaaagcattggcagatg |
51823948 |
T |
|
| Q |
442 |
caacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggacaagctcaaggggtgta |
541 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||| ||||| | |||||||| | ||| |
|
|
| T |
51823947 |
caacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgacacttggaaatgctcaaggagcgta |
51823848 |
T |
|
| Q |
542 |
tgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
51823847 |
tgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggatt |
51823795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 336 - 594
Target Start/End: Complemental strand, 31527163 - 31526905
Alignment:
| Q |
336 |
taggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatcgg |
435 |
Q |
| |
|
||||| ||||| || |||||||| | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgt |
31527064 |
T |
|
| Q |
436 |
cagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggacaagctcaagg |
535 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||| |||| | |||||||| |
|
|
| T |
31527063 |
cagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
31526964 |
T |
|
| Q |
536 |
ggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
31526963 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggatt |
31526905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 32592496 - 32592694
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || || |||||| ||||||||||||||||| |
|
|
| T |
32592496 |
taattctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttg |
32592595 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
209 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32592596 |
cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagt |
32592694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 31527388 - 31527272
Alignment:
| Q |
93 |
ctaagggaagctgagttacaaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaat |
192 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||| | | |
|
|
| T |
31527388 |
ctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagt |
31527289 |
T |
|
| Q |
193 |
atgaaaccaaggttagt |
209 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31527288 |
atgaaaccaaggttagt |
31527272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 51824353 - 51824272
Alignment:
| Q |
146 |
tactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgcaaatata |
227 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51824353 |
tactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgcaaatata |
51824272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
| Q |
15 |
tctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagttacaag |
114 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| ||||| |||||| |||| ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
51824843 |
tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag |
51824744 |
T |
|
| Q |
115 |
gtgaagttgagaggatgaatgcattga |
141 |
Q |
| |
|
|||| ||||||| ||||||||| |||| |
|
|
| T |
51824743 |
gtgaggttgagaagatgaatgctttga |
51824717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 308 - 594
Target Start/End: Complemental strand, 49187384 - 49187098
Alignment:
| Q |
308 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
49187384 |
tttttggtgattaaaactttggatggtgtaggtacaagaagcaaactgggagctgtacaagaaacagaaagagactgaagcaattctgtatgagaagaag |
49187285 |
T |
|
| Q |
408 |
gcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
507 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49187284 |
gcagaggcagaagcacagaaagcgtcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
49187185 |
T |
|
| Q |
508 |
gaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49187184 |
gaattgtgacacttggacaagctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaagggatt |
49187098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 49188317 - 49188058
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49188317 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg |
49188218 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188217 |
caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtt |
49188118 |
T |
|
| Q |
211 |
tagtcc-atgcaa--atatatataacttgattcattttttatttgctgaaattaaataat |
267 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49188117 |
tagtccaatgcaaatatatatataacttcattcattttttatttgctgaaattaaataat |
49188058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 308 - 595
Target Start/End: Complemental strand, 49191075 - 49190788
Alignment:
| Q |
308 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
407 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
49191075 |
tttttggtgattgaaattctggatggtataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaag |
49190976 |
T |
|
| Q |
408 |
gcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
507 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49190975 |
gcagaggcagaagcacagaaagcattagcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaaggaggcagagg |
49190876 |
T |
|
| Q |
508 |
gaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattt |
595 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||| ||||| |||||| ||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
49190875 |
gaattgtgacacttgggaatgctcaaggggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggattt |
49190788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 308 - 594
Target Start/End: Complemental strand, 49202364 - 49202078
Alignment:
| Q |
308 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
407 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49202364 |
ttttcggtgattcaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaag |
49202265 |
T |
|
| Q |
408 |
gcagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagg |
507 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||| ||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
49202264 |
gcagaggcagaagcacagaaagcgtcagcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagagg |
49202165 |
T |
|
| Q |
508 |
gaattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
| ||||||||| |||| | |||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
49202164 |
ggattgtgacacttgggaatgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggatt |
49202078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 49203159 - 49202944
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
49203159 |
taattctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagtta |
49203060 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
210 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49203059 |
caaggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagtt |
49202960 |
T |
|
| Q |
211 |
tagtccatgcaaatatat |
228 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
49202959 |
taat--atgcaaatatat |
49202944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 49192053 - 49191832
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||||||| |
|
|
| T |
49192053 |
taattctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagtta |
49191954 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191953 |
caaggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagtt |
49191854 |
T |
|
| Q |
211 |
tagtccatgcaaatatatataa |
232 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
49191853 |
tagtacatgcaaatatatataa |
49191832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 327 - 594
Target Start/End: Complemental strand, 49207300 - 49207033
Alignment:
| Q |
327 |
tggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
426 |
Q |
| |
|
|||||| | ||||| ||||| || |||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
49207300 |
tggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcgcaaa |
49207201 |
T |
|
| Q |
427 |
aagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggaca |
526 |
Q |
| |
|
|||||| ||||||| | |||||||||||| |||| |||| ||||||||||||||| || ||||||||||| ||||||||||| ||| ||||| |||| | |
|
|
| T |
49207200 |
aagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattatgacacttgggaa |
49207101 |
T |
|
| Q |
527 |
agctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
|||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
49207100 |
tgctcaaggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggatt |
49207033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 327 - 594
Target Start/End: Complemental strand, 49211874 - 49211607
Alignment:
| Q |
327 |
tggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
426 |
Q |
| |
|
|||||| ||||||| ||||| || |||||||| | ||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
49211874 |
tggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgagaagaaggcagaggcagaagcacaaa |
49211775 |
T |
|
| Q |
427 |
aagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggaca |
526 |
Q |
| |
|
|||||| ||||||| | |||||||||||| |||| |||| ||||||||||||||| || ||||||||||| ||||||||||| ||||||||| |||| | |
|
|
| T |
49211774 |
aagcattggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgacacttgggaa |
49211675 |
T |
|
| Q |
527 |
agctcaaggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggatt |
594 |
Q |
| |
|
|||||||| | ||||||||||| |||||| ||||||||||||||| |||| ||||| || ||||||| |
|
|
| T |
49211674 |
tgctcaaggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaagggatt |
49211607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 49213170 - 49212972
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||| |||||||| || ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49213170 |
taattcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttg |
49213071 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
209 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49213070 |
caaggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagt |
49212972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 49208330 - 49208132
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||||||| |||||||| | ||||| || || ||| ||||||||||||||||| |
|
|
| T |
49208330 |
taattccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttg |
49208231 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
49208230 |
caaggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagt |
49208132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 309 - 569
Target Start/End: Complemental strand, 26756361 - 26756101
Alignment:
| Q |
309 |
ttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaagg |
408 |
Q |
| |
|
||||||||||| ||| | ||||| ||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26756361 |
ttttggtgattcaaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgagaagaaga |
26756262 |
T |
|
| Q |
409 |
cagaggcagaagcacagaaagcatcggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagaggg |
508 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
26756261 |
cagaggcagaagcacagatagcattggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggcggaggg |
26756162 |
T |
|
| Q |
509 |
aattgtgacagttggacaagctcaaggggtgtatgtaagtaaacttcttaatgcacttgga |
569 |
Q |
| |
|
|| |||||| |||| | | ||||||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
26756161 |
gatcgtgacacttgggaatggtcaaggggtgtgtgtaagtacccttctcaacgcacttgga |
26756101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 26756696 - 26756496
Alignment:
| Q |
11 |
taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta |
110 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||||| ||||| || |||||| || |||||||||||||| |
|
|
| T |
26756696 |
taattccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttg |
26756597 |
T |
|
| Q |
111 |
caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttcc---ttagcaaagctagtgttcaatatgaaaccaaggtta |
207 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||| | ||||||| |||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
26756596 |
caaggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtac-atatgaaaccaaggtta |
26756498 |
T |
|
| Q |
208 |
gt |
209 |
Q |
| |
|
|| |
|
|
| T |
26756497 |
gt |
26756496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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