View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_7 (Length: 416)
Name: NF17672_high_7
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 44375801 - 44376199
Alignment:
| Q |
1 |
cagacgatccgagaggtttataggagctgaacctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375801 |
cagacgatccgagaggtttataggagctgaacctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacct |
44375900 |
T |
|
| Q |
101 |
gttaaaatatcttctgtgacggaaccatatatccatccaacctgaaagacgatatgaatttagcacaattgtataaactcaagcttaaagagacatgata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375901 |
gttaaaatatcttctgtgacggaaccatatatccatccaacctgaaagaggatatgaatttagcacaattgtataaactcaagcttaaagagacatgata |
44376000 |
T |
|
| Q |
201 |
tgtgtcatacgtacctcttttccccactcagtcttgtcttcgtaaccgcaactgataacatggatggcttctttcaagagtgatgcagaagttgctgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44376001 |
tgtgtcatacgtacctcttttccccactcagtcttgtcttcgtaaccgcaactgataacatggatggcttctttcaagagtgatgcagaagttgctgctt |
44376100 |
T |
|
| Q |
301 |
ttggaatgcctccatcttccataagcgttgaagctatgaaaacagacgattgtccaaaaaatttctcaaattttagttgcgatattagcggtgactttt |
399 |
Q |
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| T |
44376101 |
ttagaatgcctccatcttccataagcgttgaagctatgaaaacagacgattgtccaaaaaatttctcaaattttagttgcgatattagcggtgactttt |
44376199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 1174715 - 1174834
Alignment:
| Q |
33 |
ctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatcttctgtgacggaaccatatat |
132 |
Q |
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||||||| |||| |||| ||| ||||| |||| |||| ||| ||||||| |||||| || ||||||||||| ||||||||||| || |||||||| || |
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| T |
1174715 |
ctttaaatgcagttctttcaggaatgcaatatatagatctccatccatgacaatgcattttgaaacctgttaatatatcttctgtaactgaaccatagat |
1174814 |
T |
|
| Q |
133 |
ccatccaacctgaaagacga |
152 |
Q |
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|||||||||||||| ||||| |
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| T |
1174815 |
ccatccaacctgaacgacga |
1174834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 49590277 - 49590335
Alignment:
| Q |
213 |
acctcttttccccactcagtcttgtcttcgtaaccgcaactgataacatggatggcttc |
271 |
Q |
| |
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|
| T |
49590277 |
acctctttgccccattctgtcttgtcttcataaccacagctgataacatggattgcttc |
49590335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 26496949 - 26497014
Alignment:
| Q |
47 |
cttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatct |
112 |
Q |
| |
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|
| T |
26496949 |
cttttcggcatgcagtataccgatctccaaccacgagtatgcatctttaaacttgttagaatatct |
26497014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 38719314 - 38719390
Alignment:
| Q |
212 |
tacctcttttccccactcagtcttgtcttcgtaaccgcaactgataacatggatggcttctttcaagagtgatgcag |
288 |
Q |
| |
|
||||||||||||||| || || |||||||| ||||| ||||||||||| || ||||||||||| || || ||||||| |
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| T |
38719314 |
tacctcttttccccattcggttttgtcttcataaccacaactgataacttgaatggcttcttttaacagcgatgcag |
38719390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 13823887 - 13823996
Alignment:
| Q |
29 |
gaacctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatcttctgtgacggaaccat |
128 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||| || ||||||||| | |||||||| || || || | ||||||||||||||||||||| | |
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| T |
13823887 |
gaacctttaaatgctggccgcttaggcatgcagtatatagaccgccaaccacgggcgtgcatcttgaatccagtaagaatatcttctgtgacggaaccgt |
13823986 |
T |
|
| Q |
129 |
atatccatcc |
138 |
Q |
| |
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| |||||||| |
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| T |
13823987 |
aaatccatcc |
13823996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 38719082 - 38719199
Alignment:
| Q |
26 |
gctgaacctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatcttctgtgacggaac |
125 |
Q |
| |
|
|||||||| || || |||||||| ||||| || || || || || ||||||||||| | |||||| || ||||| || || ||||| || || || |||| |
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| T |
38719082 |
gctgaacccttgaatgcaggcctcttagggatacaatacacagaccgccaaccatggcaatgcattttgaaaccagtcaagatatcctcagtcacagaac |
38719181 |
T |
|
| Q |
126 |
catatatccatccaacct |
143 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
38719182 |
catagatccatccaacct |
38719199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 43434232 - 43434350
Alignment:
| Q |
20 |
ataggagctgaacctttaaaagcaggccttttaggcatgcagtataccgatcgccaaccatgactatgcatcttaaaacctgttaaaatatcttctgtga |
119 |
Q |
| |
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||||| || ||||||||||| || |||| || ||||||||||||| || ||||||||| | |||||||| || || || | |||||||||||||| |
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| T |
43434232 |
ataggtgcagaacctttaaatgccggccgctttggcatgcagtatatagaccgccaaccacgggcgtgcatcttgaatccagtaagaatatcttctgtga |
43434331 |
T |
|
| Q |
120 |
cggaaccatatatccatcc |
138 |
Q |
| |
|
||||||| || |||||||| |
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| T |
43434332 |
cggaaccgtaaatccatcc |
43434350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 15173032 - 15172978
Alignment:
| Q |
86 |
tgcatcttaaaacctgttaaaatatcttctgtgacggaaccatatatccatccaa |
140 |
Q |
| |
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||||||||||| || || ||||||||||||||||| || ||||| |||||||||| |
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|
| T |
15173032 |
tgcatcttaaatccagtcaaaatatcttctgtgactgagccataaatccatccaa |
15172978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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