View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_high_9 (Length: 301)
Name: NF17672_high_9
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 53614101 - 53613801
Alignment:
| Q |
1 |
tatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgcagcag |
100 |
Q |
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| T |
53614101 |
tatgagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgcagcag |
53614002 |
T |
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| Q |
101 |
atgttagactgtcagtnnnnnnnntgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatatttaccttttctag |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53614001 |
atgttagactgtcagtaaaaaaaatgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatattaaccttttctag |
53613902 |
T |
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| Q |
201 |
agtctggcaacacaaatgaacttttactcttcatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacatatcag |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53613901 |
agtctggcaacacaaatgaacttttactcttaatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacatatcag |
53613802 |
T |
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| Q |
301 |
c |
301 |
Q |
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| T |
53613801 |
c |
53613801 |
T |
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